Pairwise Alignments

Query, 780 a.a., TonB-dependent receptor from Herbaspirillum seropedicae SmR1

Subject, 833 a.a., ligand-gated channel from Pseudomonas simiae WCS417

 Score =  235 bits (599), Expect = 8e-66
 Identities = 219/851 (25%), Positives = 374/851 (43%), Gaps = 106/851 (12%)

Query: 2   VALATMTSLSVPVTSAYAQSAAAQSYHLPSGPLDQTLLRIAQQSGLLISYEPALVKSLQS 61
           +A A +  L+V  T A   S+A   + +P+G L Q L  +A+Q+GL+++++ +L +  +S
Sbjct: 17  MAFAAVPLLTVQSTHAEESSSAVGRFSIPAGDLSQALNSLAEQAGLVLAFDASLTRGKRS 76

Query: 62  APVEGNFTAPEAIKKALSNTGLELVATPSGKWTLRPVAGASTTSTTETPAHKAIADAELP 121
             + G +    A+ + LS +GL+ +   + ++ L  +         +         AE P
Sbjct: 77  QGLSGQYDTDVALTQLLSGSGLQALKLSADRYRLESIPDNGGAMELQATTISGAYQAESP 136

Query: 122 LISVAATADSGGTGFVAESSATFSRTDTPLSETPKSVSVINAAVIQSQSAQTLSDVLRNA 181
              V+        G+VA  S + ++TDT L ETP+S+S++    +++Q+A++L+ +LR +
Sbjct: 137 TGPVS--------GYVATRSLSGTKTDTALIETPQSISIVTKDQMRAQNAESLNQILRYS 188

Query: 182 SGVVARPGPYGVPS-----FAIRGYVGNAPVMSDGLSSYGSAASPAALTPTIAIAGVEVV 236
           + V+  P   G  +       IRG+  +     DGL    S+           +  VEV+
Sbjct: 189 AAVI--PETRGATASRLDQLTIRGF--SPATYLDGLRM-PSSRDALPQKDAFDLERVEVL 243

Query: 237 KGPSAIMAADAPPGGVVNVIKKAPQVEPFHEVQVAYGSNSFSQVAFDSTGAIDEDKRLRY 296
           +GP++++     P GV+N++ K P   PFHEV V YG+ +  +  FD +G +D+     Y
Sbjct: 244 RGPASVLYGQGTPSGVINMVSKRPLDTPFHEVGVEYGTFNKKRTTFDLSGPMDDQGVYSY 303

Query: 297 RFVVSADKSSENFMGYDGGRHFYIAPTLQWK-DRSTDLTLGYAHTVTREPFPQYTVGYAR 355
           R V      ++  + +   R   ++    W+ D +T LTL   H      F +   G + 
Sbjct: 304 R-VAGLFDDADGQVEHTETRRQSLSSAFTWRPDDATSLTL-LGH------FQKDPKGASY 355

Query: 356 GGY-VDGYVEH-PLGNRGDHFSMTADELTAKLEQKL----------SDNLTFVSKNGYTS 403
           G     G V H P G   D      ++   K +++            D++  V +N    
Sbjct: 356 GSVPAWGSVLHSPTGRSIDVDFYDGEKNFEKSDREYYSIGWAFEHHFDDVWTVRQNARYL 415

Query: 404 TTQGQ-DGWAAASTVTNSNALTLLGFKSSANYYTANSQNYLRLKSDLAGVKSTTLVGVDY 462
            ++GQ     +   + +   +      S  +       N ++ K D   ++ T L+G+DY
Sbjct: 416 RSEGQYRSLYSNYLMADYRTIRRSTIASDVDLDAYTLDNQVQAKFDTGPLQHTLLMGLDY 475

Query: 463 SYMHYVQYDRNSSSTTTIP-----------DIFGTINVAPISSP-LTYQFGGQTQRVGSY 510
                      ++ST T+            DIF  +  A +  P  T     ++++ G Y
Sbjct: 476 ----------QNTSTDTLSGSGVYTAGPTLDIFNPVYGAAVPVPAYTTDGTSRSEQTGVY 525

Query: 511 LQEQLIYSNLTVLASIRRDSYLSSTNIVGRAPSG-----GMHQTAYSPSLGLMYQLTPEI 565
           LQEQ+ +    +L   R D + S+ N      SG      +   A++  +GL+Y     +
Sbjct: 526 LQEQMKWDKWVLLLGGRYD-WASTDNSTQTLSSGAKSKSSLDSKAFTGRIGLVYLFDNGL 584

Query: 566 APYVNWNKGFQPNNVTAYGGGLLAPKQSEQFEAGVKFNLMDDKLELTTALYHIDYTNQSI 625
           APY ++ + F P + T YGG +  P + +Q+E G+K+        +T A++ +  TN   
Sbjct: 585 APYASYAESFNPQSGTGYGGSVFKPTEGKQYEIGIKYQPPGSNSFITAAIFDLRQTNVLT 644

Query: 626 SDP-----VHRGFYISTGGAV-SQGLEVELKGQIMPGLNVIAQYAY--------NNYVQD 671
           +DP        G   S  G V S+G E+E K  +   L++ A YAY        NN V+ 
Sbjct: 645 TDPDPTHLCGTGRCQSQDGEVQSRGFELEGKASLNDNLDITAAYAYLDNRISKSNNTVR- 703

Query: 672 YAP--------------TVKVNLPHHTGSIWTTYNFRSPALQGFGVGMGVFMSSGQDVGS 717
           YAP              T    +P HT S W  Y      L+GFGVG G     G   G 
Sbjct: 704 YAPISDIGVGPAIAAEGTTTYGVPRHTASAWADYTVHDGKLKGFGVGAGA-RYVGSSWGD 762

Query: 718 TGN-YHVPGQTETDLGLFYKM-------EKYSLNLSVKNLFNHKLYSSSTSASFIPMGPE 769
           T N   VPG T  D  + Y +       +   L L+  NL N +  +S  S S+   G +
Sbjct: 763 TANTLKVPGYTLFDAAVHYDIPNIARLKDNLRLALNATNLANKEYVASCYSYSWCWYGSQ 822

Query: 770 RTLMLTGTYDF 780
           RT+  + TY +
Sbjct: 823 RTVQASATYQW 833