Pairwise Alignments

Query, 139 a.a., biopolymer transporter ExbD from Herbaspirillum seropedicae SmR1

Subject, 142 a.a., TonB-gated outer membrane transporter - gating inner membrane protein from Pseudomonas putida KT2440

 Score = 74.7 bits (182), Expect = 5e-19
 Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 3/134 (2%)

Query: 1   MSMMNDAGGDGLAT--EINMTPLIDVMLVLLIIFIVTLPAINQAVKVTLPKATAQPTETA 58
           M +  + GGD LA   EIN+TP IDVMLVLLIIF+V  P     +KV LP +TA+P    
Sbjct: 1   MGLHLNEGGDDLAENHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASTAKPAPRP 60

Query: 59  SKDIDISIQADGTV-LWNRVPANLDELRAHVVAAAAAAVPPAVNVYADEQVPYGSVAKVL 117
            K + +S++AD  + + +   A  D+L   + A         +   AD+ V YG + +V+
Sbjct: 61  EKPVFVSVKADQKLYVGDDQVAAPDQLGPMLDAKTKGDKETTIFFQADKGVDYGDLMEVM 120

Query: 118 AGVQAGGLSRINFV 131
             ++A G  ++  V
Sbjct: 121 NNMRAAGYLKVGLV 134