Pairwise Alignments

Query, 344 a.a., C4-dicarboxylate ABC transporter from Herbaspirillum seropedicae SmR1

Subject, 340 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  183 bits (465), Expect = 5e-51
 Identities = 114/337 (33%), Positives = 184/337 (54%), Gaps = 8/337 (2%)

Query: 7   RTALAACAFVTLGLPQPAALAQQPQQPIIIKFSHVVANDTPKGKGAERFKELAEKATQGR 66
           RT +AA A   L  P  A+ AQ  + P II+F + +   + +G+  + F E  EKA+ G+
Sbjct: 6   RTLIAATAAAALATPFAASWAQDIK-PRIIRFGYGLNEISNQGRATKLFAEEVEKASGGK 64

Query: 67  VKVEVYPNSTLYKDKEELEALQLGSVQMLAPSLAKFGPLGAREFEVFDLPYIFPDKAVLK 126
           +K+     + L  D +  +AL  G+ +M+  S A    +  +E  ++D P++F +     
Sbjct: 65  MKIRAIGAAALGSDVQMQQALIGGAQEMMVGSTATLVGI-TKEMAIWDTPFLFDNAKEAD 123

Query: 127 RVTEGPIGQGLFQKLEGKGIKGLAYWDNGMKVMTAN-RPLHKVADFRALKMRIQSSKVLD 185
            V +GP+GQ +  KL+ KG+ GL YW+NG + +T N R + K+ D   +K+R+  + V  
Sbjct: 124 VVLDGPVGQKVMDKLQEKGLVGLVYWENGFRNLTNNKRAVTKLEDMDGIKLRVMQNNVFI 183

Query: 186 EQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNVYTQKMHEVQSNLTVSDHGYIGYA 245
           + F+ L AN   L FSE++ A++T  VDG EN  + + + K +EVQ  LTV++H Y  + 
Sbjct: 184 DSFKTLGANAVPLPFSELFTALETKTVDGQENPYNTILSSKFYEVQKYLTVTNHVYSPWI 243

Query: 246 VIVNKKFWEALPADIRSQLEAAMKQATLYANTIAQKENDDALAAIKASGKTRVYTLSEQE 305
           V+V+KK+W+ L  D    L  A K++  +     + E D ALA +K  G  ++  LS  E
Sbjct: 244 VLVSKKYWDGLSKDEHKVLLDAAKKSRDFERQDTRAEADKALADLKGKG-MQINQLSPAE 302

Query: 306 KAEWRRALLPVHKSMAARVGADLIEAIYKESEAAGVK 342
               R  L  V+  +A  VG DL    +KE++AA  K
Sbjct: 303 ANRMREKLAGVNSGIATNVGEDL----WKETQAAVAK 335