Pairwise Alignments

Query, 192 a.a., C4-dicarboxylate ABC transporter from Herbaspirillum seropedicae SmR1

Subject, 206 a.a., TRAP-type C4-dicarboxylate transport system, small permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 48.9 bits (115), Expect = 6e-11
 Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 26/168 (15%)

Query: 35  RVAVFLGMI----ALLVTSCILTYSVVVRYFFHQPTDWQDEASVFMLVGVIFLCS-AYVQ 89
           R++  +G +    ALL+T  ++++ V  RY  + P  W  +A + ML G +F+ + AY  
Sbjct: 10  RLSTLIGKVFAWCALLLT-LLISWEVFSRYALNNPHAWVLDAQI-MLYGTMFMTAGAYTL 67

Query: 90  SLRGHIGIEALAGMLSPLANRVRMFIVDVVSLLFCAFF-------TWKSWALFHEAWVEG 142
           S  GH+  + L G   P         VD+V  L+  FF       TW  W    E+    
Sbjct: 68  SKNGHVRGDVLYGFFQPRTQAT----VDLV--LYILFFLPGIVALTWAGWIYAGESLAIR 121

Query: 143 QTTSSTFAPPLW-IPYSLMALGMTMLTLQLLVQVLVRI----TGTVPA 185
           + T S    PL+   Y +   G+T+L LQ LV+++  I    TG  PA
Sbjct: 122 EQTFSADPLPLYPFKYVIPLAGLTLL-LQGLVEIVRCIQCIQTGAWPA 168