Pairwise Alignments

Query, 476 a.a., RND transporter from Herbaspirillum seropedicae SmR1

Subject, 472 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  315 bits (806), Expect = 3e-90
 Identities = 199/481 (41%), Positives = 264/481 (54%), Gaps = 28/481 (5%)

Query: 1   MTALVLAALLGGCAVGPDYARPALDLPQAYKET---GPWKLAAPRQIDDHQP-WWEAYGD 56
           + AL+L AL G C++ P Y  PA+DLP  Y+E    GPW  A P   D   P WW  Y D
Sbjct: 8   LAALMLLALQG-CSMAPTYQVPAVDLPAGYREQTSDGPWHSAQPS--DQLAPEWWTLYND 64

Query: 57  PVLNALMDQANAANQTIQQAAAQYRQAQATAEVARASLWPTIGAQAGASRAQTNTNGVQR 116
             LN L  Q   AN  +  A A +  +QA A    A L+P I A A   R + + +   R
Sbjct: 65  SRLNDLQQQLLKANPDLAAALAHFDASQAYASQLHAGLFPQISASAQPLRQRQSDSRPLR 124

Query: 117 ------LGNSYSVGLNASWEADLWGRIRRGAEAGEANAQASAASLAAARLSIQATLAQDY 170
                 + NS + G + S++ DLWG+IR    AG+A AQAS   LA ARLS+Q  LA  Y
Sbjct: 125 GDTQPSVYNSNTAGFSLSYDLDLWGKIRNQVAAGDAQAQASGDDLAVARLSLQHQLATLY 184

Query: 171 LQLRVTDLQKDLYRRTVAAYTRSLQLSTHQYEAGTALRSDVAQAETQLRAAQAQLIDLDD 230
           +QL   D Q  +  R++  + ++LQL+  +YE   A   D+ +A+ QL  A+AQ  ++  
Sbjct: 185 VQLNGLDAQARILDRSLDDFRQALQLTRSRYEGKIASELDLTRAQNQLAEAKAQWDEIRG 244

Query: 231 TRNQLEHAIAMLIGKAPAQFSLPALPPAAASDSAIDANAARLQGSLPQIPVGLPSELLER 290
            RN  EHAI  L+G A + FSL   P                  SLP IP  LPS LL+R
Sbjct: 245 QRNLTEHAIGELVGVAASDFSLSPSPQLI---------------SLPGIPSQLPSHLLQR 289

Query: 291 RPDIANAERLAAAANANIGVARAAYFPTLTLSASGGYNSLAFANLFNTPSRVWSLGSALA 350
           RPDIA AER   AANANIGVA+AA++P  +L+   G  +    NL +  +R W+LG  + 
Sbjct: 290 RPDIAAAERRVFAANANIGVAKAAWYPDFSLTGLIGGQTQGVGNLLSAGNRYWALGPLVN 349

Query: 351 ESLFDGGARSARNDAAVAAYDAAVAQYKQTVLGGLQEVEDKLSTLRVLDQESTVQAQAVQ 410
             +FDGG  SA    A A ++ A A Y+  VL  ++EVED L+ LR L QE+  +  A  
Sbjct: 350 LPIFDGGRLSANERQAKAEFEEASAHYRSQVLKAVREVEDNLAQLRDLQQEAQDEQAAAD 409

Query: 411 SAQLAERLAMRQYEAGTVTYLSVVTTQAASLTNQRNAVTLLGRQLVASVALIKATGGGWQ 470
           +AQ  + LAM  Y+AG V+YL VVT Q A+L  QR    +  RQL ASV L+ A GGGW 
Sbjct: 410 AAQHTQSLAMNSYQAGAVSYLDVVTAQTAALQAQRTLQAVQTRQLQASVGLVTALGGGWH 469

Query: 471 A 471
           A
Sbjct: 470 A 470