Pairwise Alignments

Query, 476 a.a., RND transporter from Herbaspirillum seropedicae SmR1

Subject, 515 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  435 bits (1118), Expect = e-126
 Identities = 239/472 (50%), Positives = 311/472 (65%), Gaps = 23/472 (4%)

Query: 6   LAALLGGCAVGPDYARPALDLPQAYKETGPWKLAAPRQIDDHQPWWEAYGDPVLNALMDQ 65
           LA LL  CA+GPDY RP +  P  +KE   W+ A P        WWE YGD  LN L+ +
Sbjct: 49  LALLLSACAIGPDYQRPEVVEPAQFKEAQGWRQATPSDSLARGAWWELYGDRQLNDLVMR 108

Query: 66  ANAANQTIQQAAAQYRQAQATAEVARASLWPTIGAQAGASRAQTNTNGVQRLGNSYSVG- 124
            N ANQT+ QA A++RQAQA A  +R + +PT+    G +RA   T       +S S G 
Sbjct: 109 LNTANQTVAQAEARFRQAQALARSSRGAFYPTVDLSVGKTRASQGTGSSNASLSSSSSGI 168

Query: 125 -------LNASWEADLWGRIRRGAEAGEANAQASAASLAAARLSIQATLAQDYLQLRVTD 177
                  L  SWEAD+WG++RRG EA EA+A+AS+A LAA RLS Q+ L Q YLQLRV D
Sbjct: 169 RDTLNAQLGVSWEADIWGKLRRGLEANEASAEASSADLAAMRLSQQSELVQSYLQLRVMD 228

Query: 178 LQKDLYRRTVAAYTRSLQLSTHQYEAGTALRSDVAQAETQLRAAQAQLIDLDDTRNQLEH 237
            Q  L + T+  Y RSLQ++ +QY AG + +  VAQA+TQL+  QA LIDL   R QLE+
Sbjct: 229 EQTRLLQATLETYQRSLQMTENQYRAGVSGKDAVAQAQTQLKTTQASLIDLIWQRAQLEN 288

Query: 238 AIAMLIGKAPAQFSLPALPPAAASDSAIDANAARLQGSLPQIPVGLPSELLERRPDIANA 297
           AIA+LIG+APA F+L     A + D            +LPQIPV LPS+LLERRPDIA+A
Sbjct: 289 AIAVLIGEAPANFNL-----AVSKDIP----------ALPQIPVSLPSQLLERRPDIASA 333

Query: 298 ERLAAAANANIGVARAAYFPTLTLSASGGYNSLAFANLFNTPSRVWSLGSALAESLFDGG 357
           ER   AANANIGVA+AAY+P L+LS +GGY+S  +A+  + P+R WS+G  LA +LFDGG
Sbjct: 334 ERSVIAANANIGVAKAAYYPDLSLSLAGGYSSSTYADWISLPNRFWSVGPKLAMTLFDGG 393

Query: 358 ARSARNDAAVAAYDAAVAQYKQTVLGGLQEVEDKLSTLRVLDQESTVQAQAVQSAQLAER 417
            RSA  D  VA+YD  VA+Y+QTVL G +EVE+ +  L+VL+ E+ V  +A+++A+ + R
Sbjct: 394 QRSAEVDRTVASYDETVAKYRQTVLDGFREVENYMVQLKVLEDEAVVSNEALEAARESLR 453

Query: 418 LAMRQYEAGTVTYLSVVTTQAASLTNQRNAVTLLGRQLVASVALIKATGGGW 469
           L   QY+AG + YL VVT QA +L+N+R  +TLL  +LVASV LI A GGGW
Sbjct: 454 LTQNQYKAGLIAYLDVVTVQATALSNERTVLTLLQTRLVASVQLIAALGGGW 505