Pairwise Alignments

Query, 186 a.a., RNA polymerase sigma-E factor protein from Herbaspirillum seropedicae SmR1

Subject, 193 a.a., RNA polymerase, sigma-24 subunit, RpoE from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score = 82.0 bits (201), Expect = 6e-21
 Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 10/179 (5%)

Query: 10  EQEDIDLIERIAQGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWTKAQ 69
           ++ED  L+ER+ +GD  AF+ L   Y  ++   + R V D   ++++  +     +    
Sbjct: 4   QEEDQQLVERVQRGDTRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALG 63

Query: 70  TYNGQSKVSTWIFAIAYKQGLKAL-SRVDTPVEMDMETMVSD---------ELVEPEHQL 119
            + G S   TW++ IA       L SR   P + D+ +  ++         ++  PE  L
Sbjct: 64  NFRGDSAFYTWLYRIAINTAKNYLVSRGRRPPDSDVRSEDAEFYDGDHGLKDIESPERAL 123

Query: 120 SETQLRRHIGGALERLSFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKL 178
              ++   +   ++ L  + RT +TL  F G+SYE+IA  M C + TV++R+F AR+ +
Sbjct: 124 LRDEIEGTVHRTIQLLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAI 182