Pairwise Alignments

Query, 186 a.a., RNA polymerase sigma-E factor protein from Herbaspirillum seropedicae SmR1

Subject, 197 a.a., RNA polymerase sigma factor RpoE from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 81.6 bits (200), Expect = 8e-21
 Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 17/180 (9%)

Query: 16  LIERIAQGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWTKAQTYNGQS 75
           L++R   G++ AFE L   Y  R+ + + R+V D  L ++I  +T    +     + G +
Sbjct: 2   LVQRTLAGEQRAFEMLVVKYQRRVERLIGRMVRDTDLVQDIAQETFIRAYRALAQFRGDA 61

Query: 76  KVSTWIFAIAY---KQGLKALSRVDTPVEMDMETMVSDELVEPEHQLSE----------- 121
           +  TW++ IA    K+ L  L R     +  M++   DE   PE +L+            
Sbjct: 62  QFYTWLYRIAVNTAKKQLMELKRDPLVFQSQMKSGEDDETSGPERELNSGVADTETPEAV 121

Query: 122 ---TQLRRHIGGALERLSFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKL 178
               ++   +  A++ L  E R  +TL    GMSYEEIA  + C I TV++R+F AR+ +
Sbjct: 122 LASKEIAEAVNAAMDALPEELRMAITLREIEGMSYEEIATALECPIGTVRSRIFRAREAI 181