Pairwise Alignments

Query, 832 a.a., ABC transporter permease from Herbaspirillum seropedicae SmR1

Subject, 832 a.a., putative ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  559 bits (1441), Expect = e-163
 Identities = 328/837 (39%), Positives = 481/837 (57%), Gaps = 25/837 (2%)

Query: 5   ALRMTWRDWRTGELRFLLIALIVAVASLSSVGFFVDRMRAGMTRDAHQLLGADLLVAADQ 64
           ALR   RD R  E+R L  AL+VAVA+ +++G+F  R+   M   A + LGADL++    
Sbjct: 10  ALRQLLRDVRASEVRVLFFALLVAVAASTAIGYFGARLNGAMQLRASEFLGADLVLQGSA 69

Query: 65  PLPPQWMQRAAAQGLQQAQTQVFPSMAQAGEGDAARAVLASIKAVTAGYPLRGQLRLQTA 124
           P   Q +    A GL+ A+   F S+     G      L+S+KA    YPLRGQ+R   A
Sbjct: 70  PAREQQLDAGKALGLRHARVVEFTSVVGGDNG----IQLSSVKAADGAYPLRGQVRSAPA 125

Query: 125 SGADRPAEGIPQPGTVWVDPQILSQLDVRVGDTLKLGDLPLKIAAVIAVEPDRGSAFVNF 184
             A+    G P PG VWV+P++L+ L + +GD++ +G   L+++ V+  EPDR + F + 
Sbjct: 126 PYAEETPGGGPAPGEVWVEPRLLAALGLAIGDSIDVGIKTLRMSRVLTYEPDRANNFYSL 185

Query: 185 APRVMLGEADLAATHLVQVGSRVTYRLLLAGPAPVVKQFQQELERQIEADKLRGVRLESL 244
            PRVM+  ADL AT ++Q GSRVTYR L  G A  + Q++Q +E+ + A++    RL   
Sbjct: 186 TPRVMMNLADLEATGVIQPGSRVTYRDLWRGDAEALAQYRQAVEKDLAANQ----RLRDT 241

Query: 245 ENGRPEMRATLDRAEQFLSLVGLLSAMLAALAVAMAARRFMLRHLDACAMLRCFGLTQAQ 304
            +G  ++   L +AE++L++  L++ +LA +AVA++A R+  R LDA A+LRC GL++ Q
Sbjct: 242 RDGNQQIGGALGKAERYLNMASLVAVLLAGVAVALSASRYAARRLDASALLRCLGLSRHQ 301

Query: 305 VTRLYLGEFMLVGLAASVLGMLIGYAAHFALLQWLGNFMPTALPPAGWQPAVQGVAAGLL 364
              LY  +  ++GL A++ G L+G+ A   L + L   +P+ +P  G  PA+ G+  GL+
Sbjct: 302 ALGLYCLQLAMLGLVAALAGALLGWLAQLGLFRLLHGLLPSVVPAGGIVPALAGIGTGLV 361

Query: 365 LLLGFALPPILQLRNVPHNRVIRRDQLTPQPLTVATYGLGTLVFSGLLLWQAGDLKLGLL 424
            L GFALPPI  L  VP  RV+RRD L     +   YG   L   GL++W+   L L LL
Sbjct: 362 ALAGFALPPIAALGQVPPLRVLRRDLLPIPASSWLVYGAALLAL-GLIMWR---LSLDLL 417

Query: 425 TIAGFLGGFGLFA--LVAWLCLRALRSLRGLVDRQ--SWRFAIDGLQRRPAAAVMQVVAL 480
                LGG GL A  L+  L L  LRSLR L+     +WR  +  L R P AA  Q +A 
Sbjct: 418 LTFALLGG-GLVAALLLGGLLLLGLRSLRQLLAGAPLTWRLGLGQLLRHPTAAAGQALAF 476

Query: 481 GLGLMALLLLTVIRGDLVGAWRQATPADAPNRFIINIQPDQRQAVEQLLRQGGVGDVALY 540
           GL L+A+ L+ ++R +L+  W+   P DAPN F +NI PD R+   Q L Q       LY
Sbjct: 477 GLILLAMALVALLRAELLDTWQAQLPKDAPNHFALNILPDDREPFIQHLHQVNAASAPLY 536

Query: 541 PMIRGRLVQINGRAISAADYAEDRAKRLVDREFNLSTLREIPPGNGIVAGRWY-----DD 595
           P+  GRLVQIN + +      +   +R V R+ +L+   E+P GN + AG W+     D+
Sbjct: 537 PVTPGRLVQINEKPVQQVVSKDSAGERAVQRDLSLTWAAELPEGNVLTAGSWWPALPADN 596

Query: 596 RQPEASVERGLAQTLGIKLGDRLQFDIAGQLVEAPVTSLRKLEWGSLRVNFFVILNPTLM 655
             P  SVE  LA +L +++GD L FDI GQ  +A V+SLR + W S + NF++I  P  +
Sbjct: 597 DIPGVSVEAELASSLKLQMGDLLTFDIGGQQRQARVSSLRNVHWDSFQPNFYMIFQPGTL 656

Query: 656 RDTPQSWITAVHLNPQQEALGNTLTRDYPNLTVVDIGSVLRQIQDVVGQVISAVEFLFLF 715
           +  P +++T+ +L P  +     L+R +P +T++ + ++L Q++ ++ QV  AVE++ LF
Sbjct: 657 QGLPTTYLTSFYLAPGHDLDVVALSRAFPAVTILQVDALLDQLRSILAQVTLAVEYVLLF 716

Query: 716 TLCSGVLVLYAALAGSQDERVREAGLLRALGATRVELARAQRIEVLLVGALAGLLAASGA 775
            L +G+ VL+A L  + DER+R+  LLRALGA R  L +A+RIE  L+GA +GLLAA G 
Sbjct: 717 VLAAGLAVLFAGLQATLDERIRQGALLRALGAARPLLVKARRIEFGLLGAASGLLAAVGC 776

Query: 776 AAIGWALAHYVFNFDWSFSPLVWLAGMSL-GAACSALGGWAGLRHVLRRPPLQTLRE 831
             I W L  Y F+  W  SP  WL  + L GA      G  G R  L   PL  LRE
Sbjct: 777 ELITWVLYRYAFDLQW--SPHPWLLVLPLTGALLVGGAGVLGTRRALNASPLAVLRE 831