Pairwise Alignments

Query, 832 a.a., ABC transporter permease from Herbaspirillum seropedicae SmR1

Subject, 804 a.a., putative ABC transporter permease from Escherichia coli BL21

 Score =  373 bits (957), Expect = e-107
 Identities = 263/826 (31%), Positives = 414/826 (50%), Gaps = 48/826 (5%)

Query: 7   RMTWRDWRTGELRFLLIALIVAVASLSSVGFFVDRMRAGMTRDAHQLLGADLLVAADQPL 66
           R  WR+WR+  L  + +AL +AVA + ++G   DRM  G+++ + + +  D  + + + +
Sbjct: 4   RWFWREWRSPSLLIVWLALSLAVACVLALGNISDRMEKGLSQQSREFMAGDRALRSSREV 63

Query: 67  PPQWMQRAAAQGLQQAQTQVFPSMAQAGEGDAARAVLASIKAVTAGYPLRGQLRLQTASG 126
           P   ++ A  +GL+  +   F +M  AG+       LA++KAV   YP+ G L+      
Sbjct: 64  PQALLEEAQKRGLKVGKQLTFATMTFAGDTPQ----LANVKAVDDIYPMYGDLQTN---- 115

Query: 127 ADRPAEGIPQPGTVWVDPQILSQLDVRVGDTLKLGDLPLKIAAVIAVEPDRGSAFVNFAP 186
              P    PQ G+V + P++++ L+++ GDT+ +GD  L+IA  +  EPD G      AP
Sbjct: 116 ---PPGLKPQAGSVLLAPRLMALLNLKTGDTIDVGDATLRIAGEVIQEPDSGFNPFQMAP 172

Query: 187 RVMLGEADLAATHLVQVGSRVTYRLLLAGPAPVVKQFQQELERQIEADKLRGVRLESLEN 246
           R+M+  AD+  T  VQ GSRVT+R    G    +  +++ L  Q++ ++    R   LE 
Sbjct: 173 RLMMNLADVDKTGAVQPGSRVTWRYKFGGNENQLDGYEKWLLPQLKLEQ----RWYGLEQ 228

Query: 247 GRPEMRATLDRAEQFLSLVGLLSAMLAALAVAMAARRFMLRHLDACAMLRCFGLTQAQVT 306
               +  +++R++QFL L  LL+ +LA  AVA+A   +     D  A+L+  G  +AQ+ 
Sbjct: 229 DEGALGRSMERSQQFLLLSALLTLLLAVAAVAVAMNHYCRSRYDLVAILKTLGAGRAQLR 288

Query: 307 RLYLGEFMLVGLAASVLGMLIGYAAHFALLQWLGNFMPTALPPAGWQPAVQGVAAGLLLL 366
           +L +G++++V   ++V G  IG      L+  L   +P ALPPA   P +  +    ++ 
Sbjct: 289 KLIVGQWLMVLTLSAVTGGAIGLLFENVLMVLLKPVLPAALPPASLWPWLWALGTMTVIS 348

Query: 367 LGFALPPILQLRNVPHNRVIRRDQLT---------PQPLTVATYGLGTLVFSGLLLWQ-- 415
           L   L P   L      RV+R D +          P    V    L  L+   +LLW   
Sbjct: 349 LLVGLRPYRLLLATQPLRVLRNDVVANVWPLKFYLPIVSVVVVLLLAGLMGGSMLLWAVL 408

Query: 416 AGDLKLGLLTIAGFLGGFGLFALVAWLCLRALRSLRGLVDRQSWRFAIDGLQRRPAAAVM 475
           AG + L LL   G LG         W+ L  LR  R  +     R A+  L R+P + + 
Sbjct: 409 AGAVVLALL--CGVLG---------WMLLNVLR--RMTLKSLPLRLAVSRLLRQPWSTLS 455

Query: 476 QVVALGLGLMALLLLTVIRGDLVGAWRQATPADAPNRFIINIQPDQRQAVEQLLRQGGVG 535
           Q+ A  L  M L LL V+RGDL+  W+Q  P ++PN F+INI  +Q   ++  L +  + 
Sbjct: 456 QLSAFSLSFMLLALLLVLRGDLLDRWQQQLPPESPNYFLINIATEQVAPLKAFLAEHQIV 515

Query: 536 DVALYPMIRGRLVQINGRAISAADYAEDRAKRLVDREFNLSTLREIPPGNGIVAGRWYDD 595
             + YP++R RL  IN +        E      ++RE NL+     P  N IVAG W   
Sbjct: 516 PESFYPVVRARLTAINDKP------TEGNEDEALNRELNLTWQNTRPDHNPIVAGNW-PP 568

Query: 596 RQPEASVERGLAQTLGIKLGDRLQFDIAGQLVEAPVTSLRKLEWGSLRVNFFVILNPTLM 655
           +  E S+E GLA+ L + LGD + F    Q   A VTSLRK++W SLR NF+ I     +
Sbjct: 569 KADEVSMEEGLAKRLNVALGDTVTFMGDTQEFRAKVTSLRKVDWESLRPNFYFIFPEGAL 628

Query: 656 RDTPQSWITAVHLNPQQEALGNTLTRDYPNLTVVDIGSVLRQIQDVVGQVISAVEFLFLF 715
              PQSW+T+         L   L R +P ++++DIG++L+Q+  V+ QV  A+E + + 
Sbjct: 629 DGQPQSWLTSFRWENGNGML-TQLNRQFPTISLLDIGAILKQVGQVLEQVSRALEVMVVL 687

Query: 716 TLCSGVLVLYAALAGSQDERVREAGLLRALGATRVELARAQRIEVLLVGALAGLLAASGA 775
               G+L+L A +     +R +E  + R LGA +  L      E  ++G ++GL+AA GA
Sbjct: 688 VTACGMLLLLAQVQVGMRQRHQELVVWRTLGAGKKLLRTTLWCEFAMLGFVSGLVAAIGA 747

Query: 776 AAIGWALAHYVFNFDWSFSPLVWLAGMSLGA-ACSALGGWAGLRHV 820
                 L   VF+F W     +W+     GA   S  GGW G R V
Sbjct: 748 ETALAVLQAKVFDFPWEPDWRLWIVLPCSGALLLSLFGGWLGARLV 793