Pairwise Alignments

Query, 356 a.a., NADH:ubiquinone oxidoreductase subunit H from Herbaspirillum seropedicae SmR1

Subject, 335 a.a., NADH:ubiquinone oxidoreductase from Pseudomonas simiae WCS417

 Score =  287 bits (734), Expect = 3e-82
 Identities = 144/328 (43%), Positives = 211/328 (64%), Gaps = 11/328 (3%)

Query: 18  PTLFTLVWTLVKILVVMVPLLVCVAYMTYWERKLIGWMHVRLGPNRVGPAGLLQPIADAV 77
           P +  ++ ++VK +V+++ ++V  A +++ ER+L+GW   R GPNRVGP G+ Q  AD +
Sbjct: 6   PEVIDVIISVVKAIVILLAVVVAGALLSFVERRLLGWWQDRYGPNRVGPFGMFQIAADML 65

Query: 78  KLIFKEISTPSKANKALFYLAPVMTIMPALAAWAVVPFSPEHVLANVNAGLLYLMAITSM 137
           K+ FKE  TP  A+K +F LAPV+ +   L A+A++P +P   +A++N GLL+  A+  +
Sbjct: 66  KMFFKEDWTPPFADKVIFTLAPVVAMSALLIAFAIIPITPTWGVADLNIGLLFFFAMAGL 125

Query: 138 EVYGIIIAGWASNSKYAFLGAMRASAQMVSYEISMGFCLVVVLMVSGSLNMTDIVMGQTQ 197
            VY ++ AGW+SN+K+A LG++RASAQ VSYE+ MG  L+ +++  GS NM DIV  Q Q
Sbjct: 126 SVYAVLFAGWSSNNKFALLGSLRASAQTVSYEVFMGLALMGIVVQVGSFNMRDIVEYQAQ 185

Query: 198 GHFASMGLNFLSWNWLPLLPIFVIYFVSGVAETNRHPFDVVEGESEIVAGHMIEYSGMSF 257
                       W  +P    F  +F++GVA T+RHPFD  E E E+  G+ IEY+GM +
Sbjct: 186 N----------LWFIIPQFFGFCTFFIAGVAVTHRHPFDQPEAEQELADGYHIEYAGMKW 235

Query: 258 AMFFLAEYAAMILISILTALLFFGGWSAPVSALDFIPGWIWLGLKTFFFLSLYVWIRASF 317
            MFF+ EY  +ILIS L   LFFGGW  P   L  +  + W  LKT FF+ L++ +RAS 
Sbjct: 236 GMFFVGEYIGIILISALLVTLFFGGWHGPFGILPQL-AFFWFFLKTAFFIMLFILLRASI 294

Query: 318 PRYRYDQIMRLGWKVFIPLTLVWLVVVA 345
           PR RYDQ+M   W+  +PLTL+ L+V A
Sbjct: 295 PRPRYDQVMDFSWRFCLPLTLINLLVTA 322