Pairwise Alignments

Query, 837 a.a., chemotaxis protein CheA from Herbaspirillum seropedicae SmR1

Subject, 710 a.a., Signal transduction histidine kinase CheA (EC 2.7.3.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  268 bits (686), Expect = 6e-76
 Identities = 149/418 (35%), Positives = 255/418 (61%), Gaps = 17/418 (4%)

Query: 422 PAPPLRESLPEESGRAGRRAEESLSG-----NKSVKVEQVKIDRLMNLIGEMVVSKNALP 476
           P  P R +  E + +A  +AE   +      + +++V   K+D+L+NL+GE+V+++  L 
Sbjct: 295 PGVPARAAA-EGTAKAAPKAETRAAAGAGLESSTLRVSVSKVDQLINLVGELVITQAMLA 353

Query: 477 YLAQRAEDQFGVRELAREIKAQYAVINRIAEEMQDAIMQVRMMPVSVVFQRFPRLVRDIS 536
             ++  +D+       + + A  A ++R   ++Q+A+M +RM+P+SVVF RFPR++RD++
Sbjct: 354 QKSRELDDKDN-----QPLLAGLADLDRNTRDLQEAVMSIRMIPMSVVFNRFPRMLRDLA 408

Query: 537 RKLGKEVQLVLVGEETEADKNIIEALADPLIHIVRNSLDHGLEGPEQRRASGKPALGSLT 596
            KLGK+V+LV  GE TE DK ++E + DPL H++RNS DHG+E PE+RRA GK   G++T
Sbjct: 409 TKLGKKVELVTQGESTELDKGLVEKITDPLTHLIRNSCDHGIEMPEERRAKGKSENGTIT 468

Query: 597 ISAAHEGDQVVIVIEDDGKGIDPALIKRKAYEKGLIDEAQLERISDQDAVNLVFSSGFST 656
           +SA HEG  ++I + DDGKG+    + RKA EKG ID    + ++D +  NL+F+ GFST
Sbjct: 469 LSATHEGGSILIEVRDDGKGLSREKLLRKAREKG-IDAP--DSLTDSEVWNLIFAPGFST 525

Query: 657 AEVVSDLSGRGVGMDVVRNAVEKVNGSLALHSVSGKGTRLQISLPLSMAVTKVMIIESDG 716
           AE V+D+SGRGVGMDVV+  +  +NG++ + S  G G R+ + LPL++A+   M +    
Sbjct: 526 AEEVTDVSGRGVGMDVVKKNIAALNGTVEIDSAEGFGMRVSVRLPLTLAIMDGMSVRVSD 585

Query: 717 QLFGVPMEHVMETVRVPRSSLHFANSSAKMV-LRGHILGLKGINQILGIAAEQKTNADGE 775
           +++ +P+ +V+E+ ++  + +      A++V +R   + +  + Q+  +    + N    
Sbjct: 586 EVYILPLSNVIESFQIKPTDIDTMAQGARVVKVRDEYMPVVELEQVFQV-PRFEFNGSSP 644

Query: 776 VAVLVVRVGGQSVGLVIDDFRETVDVIQKPLLGILGGLSLYSGSALMGDGSVLMVLNT 833
           + V VV   G  V L++D+      V+ K L      +   SG+ ++GDG V ++L+T
Sbjct: 645 IMV-VVEAEGSRVALMVDELLGQQQVVIKNLESNYRKVPNVSGATILGDGKVALILDT 701



 Score = 54.7 bits (130), Expect = 2e-11
 Identities = 87/384 (22%), Positives = 143/384 (37%), Gaps = 62/384 (16%)

Query: 8   FILETRDLLQGISEKLMQLEDAPEHVELLESLFRMVHTLKGNSGLFDVPEMTRVLHACED 67
           F  E  + L  + + L+ L+      E L ++FR  H++KG +  F   ++  + H  E 
Sbjct: 24  FFEEAGENLDQMEQMLLALDLEKADDEELNAIFRCAHSIKGGAATFGFADVAELTHQMES 83

Query: 68  LMDAVRRRQVAYSEVLADRLLDAMDFVAMLCDGLEMEAEQADPHAQEAVQIASSLRQLIG 127
           L+D +RR ++  +  + D LL++ D +  L      +    +P A  A+    S+     
Sbjct: 84  LLDKLRRHELTPTAAMVDVLLESSDALRGLLGA--HQGRGGEPPATAALVARISV----- 136

Query: 128 EHAGVESAVGDLARIGDAQDRGAAIVAAPAAGQALPLRAIPEPLRRQAFAQAQAGGELHW 187
                  A G+ A   +A      IVAAPA   A    A P P R+ A  + +   E+H 
Sbjct: 137 ------LAHGEDAEAEEAPAPAPVIVAAPAPVAAPAPVAAPAPARKAAKVEREL--EIH- 187

Query: 188 IAYRPSRECFFQGDDPFHRAREVPGFIWGRIEAPAAWPPLAELNAYDCVLHFQIV----A 243
                  E     D      R++PG              L  + A  C L  + V     
Sbjct: 188 ---VGPLENPASADGIAELFRDIPG--------------LGTIEALPCDLSTRRVWRART 230

Query: 244 AASQAELMEYFRY---VPDQVELTQLAAQWLAPAP-----ESAERASAGAHAEPAQDPID 295
           +AS ++LM+ F +     D   L Q  AQ  AP P     +  E   +G H  P  +  D
Sbjct: 231 SASDSDLMDLFTFHVGKDDIRILEQAPAQ--APVPHIVLGDDGEPMGSG-HPNPTTEGRD 287

Query: 296 --------------AVMAEIFAIQRQILQSEANMGWQDGRTQAVASTLMNCCRSIGNLEL 341
                         A      A  +   ++ A  G +    +   S +      +G L +
Sbjct: 288 YGFFEGAPGVPARAAAEGTAKAAPKAETRAAAGAGLESSTLRVSVSKVDQLINLVGELVI 347

Query: 342 IGELEIARQQSLQLRSCDPLLAWL 365
              +   + + L  +   PLLA L
Sbjct: 348 TQAMLAQKSRELDDKDNQPLLAGL 371