Pairwise Alignments

Query, 714 a.a., ligand-gated channel from Herbaspirillum seropedicae SmR1

Subject, 696 a.a., putative Outer membrane ferric siderophore receptor from Pseudomonas putida KT2440

 Score =  206 bits (523), Expect = 4e-57
 Identities = 192/674 (28%), Positives = 296/674 (43%), Gaps = 66/674 (9%)

Query: 60  RARRVGTATRSAADPMEVPQSIQSVSVEQVSVYGARTLAGALLGVPGIS---SISDTRFD 116
           RA R  TATR+  D  + PQSI  V  + +       +  AL    G+S   +     F 
Sbjct: 50  RANRSATATRTDTDIRDTPQSIDVVPAQVIKDLNTTRIDRALDFAGGVSRQNNFGGLTFL 109

Query: 117 AFRIRGFSSA----NDLLLD-GMRDDPQYVRGLGNIERVEVLRGPASVLYGRGSGGGVIN 171
            + +RGF++     N   ++ G    P       NIER+EVL+GPA+ LYGRG  GG++N
Sbjct: 110 NYSVRGFTTGELYKNGFAINRGSYSSPD----TSNIERIEVLKGPAASLYGRGDPGGLVN 165

Query: 172 RISKQPGQDVASQATLSLGSAGLLGAALDWNRPLAPHWAL--RINTGREHAGSFRDTVNG 229
            ++K+P  +  S  TLS GS      ALD N PL     L  RIN   E   SFRD V  
Sbjct: 166 IVTKRPQAEAFSTLTLSAGSWDRYRTALDANSPLDSEGNLLGRINLAVEDNDSFRDHVGS 225

Query: 230 TRQYFAPALKWESGRDSWL-LQAEYDEYERVPDRGIPGRAIATANGEPTAYALPSAGHEQ 288
            R+  +P+L W+   D+ L +  E+   E V DRGIP       NGE     + S     
Sbjct: 226 ERRIVSPSLSWQLSPDTRLMIDTEFSRTESVFDRGIP-----AVNGE-----MGSVKRST 275

Query: 289 FFGAAGRDVIRDIHMSLRSTLTRALSQDWTLR----HALALMDLNSN----FDNTFVTQA 340
           F G      IR+ + +L   L   L+ +W LR    +    +  NS+      +T +T+ 
Sbjct: 276 FLGEPNDGEIRNDNQTLDVALEHVLNDNWKLRLANHYTQGTLKGNSSEPQALVSTTITRF 335

Query: 341 YQSAPLDLDRVQRTRYQQNLQQRSVQNNLELLGQLGAHDLLLGVEHSWQKREPRLWSVAA 400
           Y+    +        +  N+ Q  +    EL G    H  L+G+E+   +   +    A 
Sbjct: 336 YRERDFE--------WNDNITQAELHGQFELGG--WQHQTLVGLEYENYRNSQKYPQSAT 385

Query: 401 PAVSAVTPENTRNGDDPTTPFQMN--YHKASNLGLYVQDKITLAAHWKMLAGLRWDRFEV 458
            A   +   N   G       + N  +    +  + +QD+I      + L G+R +RFE 
Sbjct: 386 SAAYGLDIYNPVYGKPKPAITRANDFFEHTESYAINLQDQIAFTERLRGLLGVRLERFEQ 445

Query: 459 DSRNRRNGVRSERTAHALSPRIGVVWEALPGQHAYLSWSKNFAPVGGDVIGITPDARGNF 518
            S+NR  G+ + +     +PRIGV+++  P    + + S +F P   + IG         
Sbjct: 446 TSQNRTTGLSNSQEKDVATPRIGVLYQLTPQVGVFANASTSFKP---NTIGTQGQV---- 498

Query: 519 NDLKPQFSRQVEAGIKSEWLDRRLSTTLAWFQLELFNRNVADPVRPGFFEQSGLERNRGI 578
              KP+     E G+K + LD RL  T+A F ++  N    D +  G    +G  R++G+
Sbjct: 499 --YKPEKGLGYETGVKLDLLDSRLGATIALFHIDKENVITTDAL--GESVAAGEARSQGL 554

Query: 579 ELSVEGELAAPWFVRAGWAIQSAKIVQAE---PKFVGKRASGVSGRGGSLFLSYAPTLGW 635
           +L   G+L     V   +A   A++ + +   PK  G    G++   GSL   Y    G 
Sbjct: 555 DLQFSGQLTDALRVIGAYAYIDAEVTKGDAALPK--GSDLLGIARNSGSLMGVYEFQDGA 612

Query: 636 F--AELGLTVE--GARYADRDNLLELPAYTRWDGKMGYRLDE-AEFTLAVTNLANRRYYE 690
              +++G  V   G R     +   L AY+  D    Y+  E     L + NL +R+YYE
Sbjct: 613 LRGSDVGAAVNYVGERSGQAGSDFTLDAYSTVDLLAHYKASEQVTVGLNLNNLFDRKYYE 672

Query: 691 SATGLSQVRPGAPR 704
            +   + V PG PR
Sbjct: 673 RSYNSAWVLPGEPR 686