Pairwise Alignments

Query, 306 a.a., ABC transporter permease from Herbaspirillum seropedicae SmR1

Subject, 323 a.a., ABC transporter, membrane spanning protein (sugar/ribonucleotide) from Agrobacterium fabrum C58

 Score =  132 bits (333), Expect = 8e-36
 Identities = 87/306 (28%), Positives = 143/306 (46%), Gaps = 28/306 (9%)

Query: 4   IDFTTLLLALFAGAIRVGTPFLFVSLGECLTEKGGRVNLGLEGILVCGAMTGYAASFYSG 63
           +DF  +L+++    +R+  P LF +L    +E+ G  ++GLEG ++  A      ++ + 
Sbjct: 1   MDFFDMLVSILGSTVRLTIPLLFTALAGLFSERAGVFDIGLEGKMLAAAFASACVAYLTA 60

Query: 64  SAWLGVLAAGCTGLLLGVLHGVVCSLPRVNDIAFGIALMLLGTGLAFFLGKPFI-----Q 118
           + W G+LA     +L  ++HG      R N I  G+AL  +  GL   LG+ +       
Sbjct: 61  NPWAGLLAGIGVSILFSLIHGFAVITNRGNQIVSGVALNFIAAGLTVVLGQAWFGQGGRT 120

Query: 119 PQAP--------MLPSID-------LGAWSSNDRLHHALQINALFFIGVVLALVLQWGLS 163
           PQ P        +LP  D       +G   +N    +    N L ++  +   +  W L 
Sbjct: 121 PQLPGEGRFAPIILPGADAMREVPFIGPLYANVISGN----NILTYLAFLAVPLSWWVLY 176

Query: 164 ATRWGLALRLVGDHAETARALGYRLTGTRIAATAAGGFLAAVGGAYLSLYYPGSWNEGLS 223
            TR+GL LR VG++       G  +T  R  A    GFL    GAYL++    ++   +S
Sbjct: 177 RTRFGLRLRAVGENPGAVDTAGISVTWMRYRAVIVAGFLCGFSGAYLAVAQSAAFIANMS 236

Query: 224 SGQGLMAVALVIFARWQPWRCLLAALLFGAAGALGPALQAVGVTS----GYYLFNAAPYA 279
           +G+G +A+A +IFA+W+P   + A LLFG   A    +Q   V         +F A PY 
Sbjct: 237 AGKGYIALAALIFAKWKPVPVMFACLLFGFLDAFANFMQGKSVPGIGEVPVQIFQAMPYI 296

Query: 280 LTLLIM 285
           LT +++
Sbjct: 297 LTCILL 302