Pairwise Alignments

Query, 880 a.a., histidine kinase from Herbaspirillum seropedicae SmR1

Subject, 1172 a.a., PAS domain S-box from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  142 bits (358), Expect = 1e-37
 Identities = 99/393 (25%), Positives = 197/393 (50%), Gaps = 25/393 (6%)

Query: 413 ELRQALQAADEANLAKSGFLTRISHDLRTPLTSILGFADMIQAS--GGPHAGHGRIIMRS 470
           +L+Q+++ A++AN AKS FL  +SH++RTPL  I+GF+D++  +        +  I+ +S
Sbjct: 522 DLQQSMRHAEQANRAKSEFLANMSHEIRTPLNGIIGFSDLVLKTELNDRQEQYLSIVNQS 581

Query: 471 ARHMLTMVNDLIDYARGDPLDTPQPTPLY-LHALLQEIAQEGQVLAQRQHNHFTLDISPD 529
           A  +L ++ND++D+++ +          Y L+ L+++ +     +  ++     L+ISP+
Sbjct: 582 ANSLLNIINDILDFSKIEAGKLDLDIERYDLYELVEQASDIITYVIHQKGLEMLLNISPN 641

Query: 530 LPPVLALDARRLHRILGNLLDNAAKYTREGRIGLHVQWQADHADAGKGALQIEVSDTGCG 589
           +P    +D+ RL ++L NLL NA+K+T +G I L +   ++    G+  ++  V DTG G
Sbjct: 642 IPRFAWIDSVRLKQVLVNLLGNASKFTDKGEIELKLTPLSNSNKNGEMDIRFSVRDTGIG 701

Query: 590 IAPQFQSRIFEPFERADAD--RRQPGIGMGLAIVRLWVQRMGGSIVLESQPGMGTRMHLQ 647
           I  + Q +IFE F + D    ++  G G+GL I    +Q MG  + L S P  G+  +  
Sbjct: 702 IKSEKQDKIFEAFSQEDVSTTKKYGGTGLGLTISNRLLQLMGSKLQLTSTPNRGSTFYFD 761

Query: 648 LPAERGSEQDIASHHVQEHSSTRVLIDGAG--RQVVVVEDSPEIARLLSDQLSSLGFAVS 705
           L              ++      + ++G     ++++V+D+     ++   L+  G    
Sbjct: 762 L-------------RIKCEDGQAIPLEGEPNLHKILIVDDNANNRMIIERMLALKGIQTV 808

Query: 706 VFGDGETAIAHLSALTMDQEAPALVLTDYLLPGVHGGAVLQAARRLLPEVPVLLLSATLH 765
              +G  AI  L    +D E   ++L D+ +P ++G    +  R    E P++ L ++  
Sbjct: 809 QAKNGYEAIQRL----VDGEEYDVILMDFQMPYLNGIDTARKIRANFKEQPIIFLHSSSE 864

Query: 766 ACEVEL-DGDLRFDGSLLKPVNFSELQEMIAQL 797
              + L   +L     L+KP+   ++ + + ++
Sbjct: 865 DKTISLASKELSIPHRLIKPIKMQDMYDALLKI 897