Pairwise Alignments

Query, 758 a.a., ATP-dependent DNA helicase from Herbaspirillum seropedicae SmR1

Subject, 636 a.a., putative ATP-dependent DNA helicase YoaA from Escherichia coli ECOR38

 Score = 42.7 bits (99), Expect = 6e-08
 Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 20/247 (8%)

Query: 506 RNTVLAVRNVVPAPFLGPRFAQAHATTLF-SATLG---PWHYFADLLGMPKDTAWIDVES 561
           R+  LA+  +  A       AQ   + +F SATL      H+F   LG+ +  + + + S
Sbjct: 366 RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLL-LPS 424

Query: 562 PF-HASQLEVRVAQDISTRWQRRSASIAPITALMARQFHQRPGNYLAFFSSFDYLQQALA 620
           PF ++ Q  + V +++    Q      A   A M R   +          +   + + LA
Sbjct: 425 PFDYSRQALLCVPRNLP---QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481

Query: 621 AFTRAHPDIPTWQQSRGMSEAEREAFLARFVVGGRGIGFAVLGGSFGEGVDLPGERLIGA 680
              RA   +P   Q     E  +   L +FV  G  +   V   SF EGVD+ G+ L  +
Sbjct: 482 EQFRATMTLPVLLQG----ETSKGQLLQQFVSAGNAL--LVATSSFWEGVDVRGDTL--S 533

Query: 681 FVATLGLPQVNEVNEQLRLRMQALF---GAGYDYTYLYPGLQKVVQAAGRVIRTESDQGV 737
            V    LP  +  +  L+ RM+      G  +D   L   +  + Q  GR+IR   D+GV
Sbjct: 534 LVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGV 593

Query: 738 VWLIDER 744
           + + D R
Sbjct: 594 LVICDNR 600



 Score = 35.0 bits (79), Expect = 1e-05
 Identities = 20/42 (47%), Positives = 26/42 (61%)

Query: 199 RPGQRQLAEAVFRAHAGRRSLLAQAPTGIGKTLGTLFPALKA 240
           R  QRQ+A AV +A    + L+ +A TG GKT   L PAL+A
Sbjct: 21  REPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA 62