Pairwise Alignments

Query, 598 a.a., DNA primase from Herbaspirillum seropedicae SmR1

Subject, 581 a.a., DNA primase (EC 2.7.7.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  377 bits (967), Expect = e-109
 Identities = 212/473 (44%), Positives = 295/473 (62%), Gaps = 16/473 (3%)

Query: 2   IPQSFIQDLLNRVDIVDVVGRYVQLKKGGANFMGLCPFHNEKSPSFTVSPTKQFYHCFGC 61
           IP+ FI DLL R DIVD++   V+LKK G N+   CPFHNEK+PSFTV+  KQFYHCFGC
Sbjct: 5   IPRVFINDLLARTDIVDLIDVRVKLKKQGKNYHACCPFHNEKTPSFTVNGEKQFYHCFGC 64

Query: 62  GAHGTAISFLIEYSGMGFVEAVKDLAQNVGMVVPEREDSIPLAQRQEKQAKSMALSDVMT 121
           GAHG AI FL+ Y  + FVE V++LA    + +P  E    L+Q +  Q ++  L  +M 
Sbjct: 65  GAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPY-EAGTGLSQIERHQRQN--LYQLMN 121

Query: 122 RANDFYRHQLR--SAQPAIAYLKGRGLTGEIAARFGLGYSPDEWDS-LRQVFPDYDNEAL 178
             NDFY+  L   +A+PA  YL+ RGL+ EI  RF +G++P  WD+ L++   + DN+AL
Sbjct: 122 GLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKAL 181

Query: 179 VESGLVIDKSEEGGAHRKRYDRFRGRIMFPIRNTKGQVIGFGGRVMDGGEPKYLNSPETP 238
           +    ++  +E+G      YDRFR R+MFPIR+ +G+VIGFGGRV+    PKYLNSPET 
Sbjct: 182 LLDAGMLVNNEQGST----YDRFRNRVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETD 237

Query: 239 LFQKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACTPIHVQKL 298
           +F KG +LYGL+EA+Q   E    LV EGYMDVVALAQ     AVA+LGT+ T  H+  L
Sbjct: 238 IFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTADHMHML 297

Query: 299 VRQTDQVIFSFDGDNAGRRAARRALEACLPHASDNKTIKFLFLPKEHDPDSYVREMGAPA 358
            R T+ VI  +DGD AGR AA RALE  +P+ +D + ++F+FLP   DPD+ VR+ G  A
Sbjct: 298 FRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVRKEGKAA 357

Query: 359 FEEQIREALPLSQFLLREIIGENDLRTPEGRAHAQFAAKPLLQALPASALRLQIVRSVA- 417
           FE ++ +A PLS FL   ++ + DL +P+G       A PL+  +P  A R+Q+ +++  
Sbjct: 358 FEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDAHRIQLRQTLGL 417

Query: 418 QATQSTPAELEVLFELEKPVARVRAAPARSKRTAPVGLERQIMRLLVAHPQLA 470
           +      ++L+ L   +      R AP   + T      R ++ LLV +P LA
Sbjct: 418 KLGIFDDSQLDRLVPKQAESGVSRPAPQLKRTTM-----RILIGLLVQNPDLA 465