Pairwise Alignments

Query, 598 a.a., DNA primase from Herbaspirillum seropedicae SmR1

Subject, 581 a.a., DNA primase from Escherichia coli BL21

 Score =  385 bits (989), Expect = e-111
 Identities = 217/478 (45%), Positives = 298/478 (62%), Gaps = 26/478 (5%)

Query: 2   IPQSFIQDLLNRVDIVDVVGRYVQLKKGGANFMGLCPFHNEKSPSFTVSPTKQFYHCFGC 61
           IP+ FI DLL R DIVD++   V+LKK G NF   CPFHNEK+PSFTV+  KQFYHCFGC
Sbjct: 5   IPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHNEKTPSFTVNGEKQFYHCFGC 64

Query: 62  GAHGTAISFLIEYSGMGFVEAVKDLAQNVGMVVPEREDSIPLAQRQEKQAKSMALSDVMT 121
           GAHG AI FL+ Y  + FVE V++LA    + VP    S P    Q ++ +   L  +M 
Sbjct: 65  GAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGP---SQIERHQRQTLYQLMD 121

Query: 122 RANDFYRHQLRS--AQPAIAYLKGRGLTGEIAARFGLGYSPDEWDSLRQVF---PDYDNE 176
             N FY+  L+   A  A  YL+ RGL+ E+ ARF +G++P  WD++ + F   P+ + +
Sbjct: 122 GLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPE-NRQ 180

Query: 177 ALVESGLVIDKSEEGGAHRKRYDRFRGRIMFPIRNTKGQVIGFGGRVMDGGEPKYLNSPE 236
           +L+++G+++   +      + YDRFR R+MFPIR+ +G+VIGFGGRV+    PKYLNSPE
Sbjct: 181 SLIDAGMLVTNDQG-----RSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPE 235

Query: 237 TPLFQKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACTPIHVQ 296
           T +F KG +LYGL+EA+Q   E    LV EGYMDVVALAQ G   AVA+LGT+ T  H+Q
Sbjct: 236 TDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQ 295

Query: 297 KLVRQTDQVIFSFDGDNAGRRAARRALEACLPHASDNKTIKFLFLPKEHDPDSYVREMGA 356
            L R T+ VI  +DGD AGR AA RALE  LP+ +D + ++F+FLP   DPD+ VR+ G 
Sbjct: 296 LLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGK 355

Query: 357 PAFEEQIREALPLSQFLLREIIGENDLRTPEGRAHAQFAAKPLLQALPASALRLQIVRSV 416
            AFE ++ +A+PLS FL   ++ + DL TP+GRA     A PL+  +P   LR+ +    
Sbjct: 356 EAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL---- 411

Query: 417 AQATQSTPAELEVLFELEKPVARVRAAPARSKRTAPVGLERQIMR----LLVAHPQLA 470
               Q    +L +L + +      +AA +   R  P  L+R  MR    LLV +P+LA
Sbjct: 412 ---RQELGNKLGILDDSQLERLMPKAAESGVSRPVP-QLKRTTMRILIGLLVQNPELA 465