Pairwise Alignments

Query, 283 a.a., type III secretion protein from Herbaspirillum seropedicae SmR1

Subject, 252 a.a., Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 70.1 bits (170), Expect = 5e-17
 Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 6/151 (3%)

Query: 6   LLLATLAACSRMVVLQAALNDADANEIILVLNRKGIEVDK-QKGKDGVTLLVKDVELSRA 64
           LL+ TLA C    +L+  L+   ANE+I VL    IE +K   GK G ++ V + + + A
Sbjct: 10  LLVMTLAGCKDKDLLKG-LDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAA 68

Query: 65  TETMNAAGLPRRSLSNLGEVFKKQGMISSPMEERIRYIHGLSEELESTMLQFDHVVSARV 124
              +    LP R    + ++F    ++SSP  E+ R    + + LE ++   + V+SARV
Sbjct: 69  VYWIKTYQLPPRPRVEIAQMFPADSLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARV 128

Query: 125 HVVLP----ERIAPGEPIQPSSAAVFVKYRP 151
           H+       E   P +P+  S+ AV+ +  P
Sbjct: 129 HISYDIDAGENGRPPKPVHLSALAVYERGSP 159