Pairwise Alignments

Query, 618 a.a., ATP-dependent DNA helicase RecQ from Herbaspirillum seropedicae SmR1

Subject, 614 a.a., ATP-dependent DNA helicase RecQ from Dickeya dadantii 3937

 Score =  548 bits (1411), Expect = e-160
 Identities = 298/609 (48%), Positives = 401/609 (65%), Gaps = 8/609 (1%)

Query: 5   DSLPADAPPQER-ALHVLETVFGYSSFRGHQGEIVQHVAGGGDALVLMPTGGGKSLCYQV 63
           D L AD   +E  A+ VL   FGY  FR  Q  I+     G D LV+MPTGGGKSLCYQ+
Sbjct: 5   DVLNADVLNKETLAMQVLRETFGYQQFRPGQQAIINAAVSGRDCLVIMPTGGGKSLCYQI 64

Query: 64  PALLRQGTGVVISPLIALMQDQVDALDEVGVRAAFLNSTQSFDEAMQIERRLRQGDLDLL 123
           PAL+ +G  +V+SPLI+LM+DQVD L   GV AA LNSTQ+ ++   +    R+G+L LL
Sbjct: 65  PALVLEGLTLVVSPLISLMKDQVDQLQAYGVAAACLNSTQTREQQQAVFSACRRGELKLL 124

Query: 124 YVAPERLMTPRCLDLLESARISLFAIDEAHCVSQWGHDFRPEYIKLSVLHERFPQVPRIA 183
           Y+APERL T   L+ L     +L AIDEAHC+SQWGHDFRPEY  L  + ++ P +P +A
Sbjct: 125 YIAPERLTTDGFLEQLTHWNTTLIAIDEAHCISQWGHDFRPEYRALGQIKQQLPALPIVA 184

Query: 184 LTATADQQTREEIIHRLQLEDARQFVSSFDRPNIRYQIVEKANGRKQLLDFIKSEHPEDA 243
           LTATAD+ TR++I   L L D    +SSFDRPNIRY +VEK     QL  F++ +  + +
Sbjct: 185 LTATADETTRQDIARLLDLRDPLINISSFDRPNIRYTLVEKFKPLDQLWLFVQGQRGK-S 243

Query: 244 GIVYCLSRKKVEETADFLRSEGINALAYHAGMDYAQRTANQARFLREDKIVMVATIAFGM 303
           GIVYC SR KVE+    L++ G++  AYHAG+D  +R+  Q  FLR+D  V+VAT+AFGM
Sbjct: 244 GIVYCNSRAKVEDLCARLQNRGLSVGAYHAGLDNDRRSQVQEAFLRDDLQVVVATVAFGM 303

Query: 304 GIDKPDVRFVCHLDLPKSVEGYYQETGRAGRDGLPADAWMAYGLQDVVQQRRMIDESDAD 363
           GI+KP+VRFV H D+P+++E YYQETGRAGRDGLPA+A + Y   D+   RR ++E  A 
Sbjct: 304 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAALFYDPADMAWLRRCLEEKPAG 363

Query: 364 ETFKRVLGTKLNAMLALCETLHCRRVHLLDYFGE-KSAPCGNCDTCLTPPVSFDATVEVQ 422
                +   KLNAM A  E   CRR+ LL+YFGE +   CGNCD CL PP  +D  V+ Q
Sbjct: 364 VQLD-IERHKLNAMGAFAEAQTCRRLVLLNYFGENRQQACGNCDVCLDPPRRYDGLVDAQ 422

Query: 423 KLLSTVYRVEQRFAPGHVIEVLRGIDGERVKQWRHDQLSVFGVGSDRGEAEWRAILRQVI 482
           K LS VYRV QRF  G++ EVLRG + +R++++ HD+L V+G+G D+ + +W +ILRQ+I
Sbjct: 423 KALSCVYRVGQRFGIGYIAEVLRGANNQRIREFGHDKLPVYGLGKDKTQEQWVSILRQLI 482

Query: 483 ALGLLTVDADNYSALKLTEAARPVLRGEQAVQLRRYQKPEKAKRSSQRSSFVETDLSTEE 542
            LGLL  +  ++SAL+LTE+ARPVLRG+  +QL     P     S  R+S  +T     +
Sbjct: 483 HLGLLAQNIAHHSALQLTESARPVLRGDVPLQL---AVPRVISLSKPRAS-QKTYGGNYD 538

Query: 543 QALFEKLRWWRVETARAHNVPAYVIFHDATMREIAKARPQSLDDLRHVTGVGEKKLETYG 602
           + LF KLR  R   A   N+P YV+F DAT+ E+A+  P +  +L  V GVG++KLE +G
Sbjct: 539 RKLFAKLRKLRKSIADEDNIPPYVVFSDATLLEMAELLPVTASELLAVNGVGQRKLERFG 598

Query: 603 AQIIALIAE 611
              + LI +
Sbjct: 599 TPFMTLIRD 607