Pairwise Alignments

Query, 402 a.a., hemolysin D from Herbaspirillum seropedicae SmR1

Subject, 397 a.a., multidrug efflux RND transporter periplasmic adaptor subunit AcrA from Escherichia coli ECRC101

 Score =  362 bits (929), Expect = e-104
 Identities = 199/393 (50%), Positives = 264/393 (67%), Gaps = 5/393 (1%)

Query: 7   FTRLTMTVAIAA--ALVACGQKPAAQGGPMPPSEVSVVTIAPQRVAITNELPGRVEAFRV 64
           FT L + + ++   AL  C  K A QGG   P+ V VVT+  + + IT ELPGR  A+R+
Sbjct: 7   FTPLAVVLMLSGSLALTGCDDKQAQQGGQQMPA-VGVVTVKTEPLQITTELPGRTSAYRI 65

Query: 65  AQVRARVAGIVQKRVFKEGSEVKEGQVLFKIDPAQYKASLESAQATLARAQANLTQTTLT 124
           A+VR +V+GI+ KR FKEGS+++ G  L++IDPA Y+A+ +SA+  LA+AQA      LT
Sbjct: 66  AEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLT 125

Query: 125 AQRYKPLVEVNAVSKQEYDNAVAAQKQAEADVAAGKAAVQTASLNLGYATVTSPISGRIG 184
             RY+ L+    +SKQEYD A+A  +QA A V A KAAV+TA +NL Y  VTSPISGRIG
Sbjct: 126 VNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIG 185

Query: 185 RALVTEGALVGQGDATQLALVQQLDPVYVNVTQSSADLLKLQQAMAAGQLKSVGDNKASV 244
           ++ VTEGALV  G AT LA VQQLDP+YV+VTQSS D L+L+Q +A G LK   + KA V
Sbjct: 186 KSNVTEGALVQNGQATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTLKQ-ENGKAKV 244

Query: 245 TLELENGQAYPLPGKLLFSDISVDENTGSVSLRAEFPNPKRLLLPGTYVRAKIEQAVDEQ 304
           +L   +G  +P  G L FSD++VD+ TGS++LRA FPNP   LLPG +VRA++E+ ++  
Sbjct: 245 SLITSDGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEGLNPN 304

Query: 305 ALLVPQQAVVR-DAGGSTVMVVNAENKVEPRPVKTGGARGNNWQVLDGLKEGDRVIVEGL 363
           A+LVPQQ V R   G +TV+VV A++KVE RP+    A G+ W V +GLK GDRV++ GL
Sbjct: 305 AILVPQQGVTRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGL 364

Query: 364 QKVRPGATVKPVQWNPAGAPAQASGQPAKQEAS 396
           QKVRPG  VK  +         ASG   +Q  S
Sbjct: 365 QKVRPGVQVKAQEVTADNNQQAASGAQPEQSKS 397