Pairwise Alignments

Query, 1071 a.a., transporter from Herbaspirillum seropedicae SmR1

Subject, 1059 a.a., Multidrug efflux RND transporter MexF from Pseudomonas putida KT2440

 Score = 1348 bits (3490), Expect = 0.0
 Identities = 691/1052 (65%), Positives = 838/1052 (79%), Gaps = 4/1052 (0%)

Query: 1    MNISKFFIDRPIFAGVLSVLLLLGGVLAMLQLPISEYPEVVPPSVVVRAQYPGANPKVIA 60
            MN SKFFI RPIFA VLS++LL+ G +++ QLPISEYPEVVPP+VVVRA +PGANPKVI 
Sbjct: 1    MNFSKFFITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIG 60

Query: 61   ETVASPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQNRVSQALPRL 120
            ETVA+PLE+ I GVENMLYM SQ+ +DG LT+T+ F LG D D AQ  VQNRV++  P+L
Sbjct: 61   ETVAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRTQPKL 120

Query: 121  PEDVQRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLARIQGVGEVGLF 180
            PE+V R+G+T  K+SP LTMVVHLTSPDNRYD  YL NYA+LN+KD LAR+ GVG+V LF
Sbjct: 121  PEEVTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLF 180

Query: 181  GSGNYAMRVWLDPNKVAQRGLTATDVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQ 240
            G G+Y++RVWLDPNK A R LTA+DVV AIREQN QVAAG +GA P+   T  QLS+N Q
Sbjct: 181  GMGDYSLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQLSINTQ 240

Query: 241  GRLKTEGEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGA 300
            GRL  E EF +II++A  DG  TRL D+ARVEL +S+Y LRSLL+N+PAVAIPIFQ PG+
Sbjct: 241  GRLVNEEEFENIIIRAGADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS 300

Query: 301  NALDVSTQVRAAMKELSADFPSSVSYSIVYDPTQFVRASIEAVVHTLLEAIALVVIVVII 360
            NA+++S +VRA M EL  DFP  + YSIVYDPT FVR SIEAVVHTL EA+ LVV+VVI+
Sbjct: 301  NAIEISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALVLVVLVVIL 360

Query: 361  FLQTWRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVE 420
            FLQTWRASIIPLLAVPVS+IGTF++M  FG+++NALSLFG+VLAIGIVVDDAIVVVENVE
Sbjct: 361  FLQTWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVE 420

Query: 421  RNIGAGLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAIST 480
            RNIG GL P +AT +AM EV+GPIIA AL L AVFVP AF++GLTGQFYKQFA+TIAIST
Sbjct: 421  RNIGLGLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAIST 480

Query: 481  VISAFNSLTLSPALAALLLKGHGDKPDWLTRQMDRFLGGF-FIRFNRFFNRASDNYGHGV 539
            VISAFNSLTLSPALAA+LLK H    D  +R +D+ LG + F  FNRFF+RAS +Y  GV
Sbjct: 481  VISAFNSLTLSPALAAVLLKDHHAPKDRFSRFLDKLLGSWLFSPFNRFFDRASHSYVGGV 540

Query: 540  TGVIKRKGATMGVYVLLLAAT-LGISYIVPGGFVPGQDKQYLVAFAQLPNGASIDRSEEV 598
              VI+  G  + VY  L+  T LG S   P GFVP QDKQYLVAFAQLP+ AS+DR+E V
Sbjct: 541  RRVIRSSGIALFVYAGLMGLTYLGFS-STPTGFVPAQDKQYLVAFAQLPDAASLDRTEAV 599

Query: 599  MRKMSDIMLKEPGVASAIAFPGLSINGFTNSSSAGIVFVGLKPFEERKSKDLSGNAIAAS 658
            +++MS+I LK+PGVA ++AFPGLSINGFTNS ++GIVF  LKPF+ERK    S  AIAA+
Sbjct: 600  IKRMSEIALKQPGVADSVAFPGLSINGFTNSPNSGIVFTPLKPFDERKDPSQSAAAIAAA 659

Query: 659  LNKKFGSIKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQAFMKAAAKEP 718
            LN +F  I++A+ A+FPPPPV GLGT+GGF++QIEDR  LGY  L K  Q  +  +   P
Sbjct: 660  LNAQFADIQDAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLGYEALYKETQNIIAKSHNVP 719

Query: 719  ALGPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVNDFNRFGRVYQV 778
             L  +F+SYQ+NVPQ+D  +DR KAK  G+ +TD+F+T+Q+YLGSLY NDFNRFGR YQV
Sbjct: 720  ELAGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYTNDFNRFGRTYQV 779

Query: 779  RAQADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNGYTAADINGGP 838
              QA+  FR  AE I QLK RN+ GEM+PL++ +KV  T GP+ V+ YNG+  A+ING  
Sbjct: 780  NVQAEQQFRLDAEQIGQLKVRNNLGEMIPLATFLKVSDTSGPDRVMHYNGFITAEINGAA 839

Query: 839  APGYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQKILAGNAGVWVFPISVLLVFLVLAA 898
            APGYSS QA+AA E++    LP G+ FEWTDLTYQ+IL+GN  + VFP+ VLL FLVLAA
Sbjct: 840  APGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALLVFPLCVLLAFLVLAA 899

Query: 899  LYESLTLPLAVILIVPMSILAALTGVWLTRGDNNIFTQIGLMVLVGLSAKNAILIVEFAR 958
             YES +LPLAVILIVPM++L+A+TGV ++ GDNNIFTQIGL+VLVGL+ KNAILIVEFA+
Sbjct: 900  QYESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIVEFAK 959

Query: 959  ELEMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRHAMGIAVFFGM 1018
            + + +G   + A +EA RLRLRPILMTSIAFIMGVVPLV SSGAGSEMRHAMG+AVF GM
Sbjct: 960  DEQAKGLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAMGVAVFSGM 1019

Query: 1019 LGVTLFGLFLTPVFYVLLRT-IDRRALHSASH 1049
            +GVT+FGLFLTPVF+ L+R  ++RR    A H
Sbjct: 1020 IGVTVFGLFLTPVFFFLIRRFVERRQARKAEH 1051