Pairwise Alignments

Query, 941 a.a., excinuclease ABC subunit UvrA from Erwinia tracheiphila SCR3

Subject, 1005 a.a., excinuclease ABC subunit UvrA from Rhodopseudomonas palustris CGA009

 Score = 1139 bits (2947), Expect = 0.0
 Identities = 586/974 (60%), Positives = 735/974 (75%), Gaps = 41/974 (4%)

Query: 4   IEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           I +RGAR HNLKN+++ IPRDKL+V TGLSGSGKSSLAFDT+YAEGQRRYVESLSAYARQ
Sbjct: 20  ITIRGAREHNLKNVDVTIPRDKLVVFTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 79

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPEH 123
           FL +M+KPDVD I+GLSPAISIEQK+TS NPRSTVGT+TEI+DY+RLL+ARVG P  P  
Sbjct: 80  FLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARVGVPYSPAT 139

Query: 124 DVTLAAQTVSQMVDNVLALTEGRRLMLLAPIIKERKGEHSKTLENLASQGYIRARIDGEV 183
            + + +QTVSQMVD VLAL EG RL LLAP+++ RKGE+ K L +   +G+ R +IDG  
Sbjct: 140 GLPIESQTVSQMVDRVLALPEGTRLYLLAPVVRGRKGEYRKELADWLKKGFQRVKIDGAF 199

Query: 184 CDLSDPPKLELQKKHTIEVVVDRFKVRDDLQQRLAESFETALELSGGTVVV--------- 234
            +L++ P L+ +  H I+VVVDR  VR D+ QRLAESFETAL+L+ G  V+         
Sbjct: 200 HELAEAPTLDKKFPHDIDVVVDRIVVRPDIGQRLAESFETALKLAEGLAVIEYADAPAAP 259

Query: 235 ----------------ADM------DDTSAEELVFSANFACPVCGYSMSELEPRLFSFNN 272
                           AD       D + AE ++FS  FACPV G+++ E+EPRLFSFNN
Sbjct: 260 PTAEPGQDEPADKKKKADKKVAKIHDKSGAERILFSEKFACPVSGFTIPEIEPRLFSFNN 319

Query: 273 PAGACATCDGLGVQQYFDPERVVQNPDLSLAGGAIRGWDRRNF-YYFQMLCSLSEHLNFD 331
           P GAC  C GLG++Q+ D + VV + +L+L  GAI  W + +  YY Q L +L +H  F 
Sbjct: 320 PYGACPECGGLGIEQHIDADLVVPDKELTLRKGAIAPWAKSSSPYYLQTLTALGKHYKFT 379

Query: 332 IETPFISLDASTRKVILYGSGKENIEFKYINDRGDTSVRRHPFEGVLHNMERRYKETESA 391
           ++T +  L    + V+L+GSG + I+F Y  D   +   + PFEGV+ N+ERR++ETES 
Sbjct: 380 LDTKWKDLPKKVQNVLLHGSGDDEIKFSY-EDGVRSYDTKKPFEGVVTNIERRFRETESE 438

Query: 392 AVREDLAKFISNRACASCEGTRLRREARHVFVENTNLPTISDMSIGHAMTFFQEMK--LS 449
             RE+L K+ S+  C +C G RL+ EA  V V   ++  +S++S+  A  +F ++   L+
Sbjct: 439 WAREELGKYFSDVPCDACHGHRLKPEALCVKVGGKHIGEVSELSVKAAGDWFAKVPEVLN 498

Query: 450 GQRAKIAEKVLKEIGDRLKFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVM 509
            Q+ +IA ++LKEI DRL FL++VGLNYL+LSRS+ TLSGGE+QRIRLASQIG+GL GV+
Sbjct: 499 KQQNEIAVRILKEIRDRLSFLLDVGLNYLTLSRSSGTLSGGESQRIRLASQIGSGLTGVL 558

Query: 510 YVLDEPSIGLHQRDNERLLETLVHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGVRGG 569
           YVLDEPSIGLHQRDN RLL+TL  LR+LGNTVIVVEHDEDAI  ADHV+DIGPGAGV GG
Sbjct: 559 YVLDEPSIGLHQRDNARLLDTLKRLRDLGNTVIVVEHDEDAILLADHVLDIGPGAGVHGG 618

Query: 570 QVVAEGTVDDIMAVDASLTGQFLSGKRSIAVPQERVKAAPN--KVLKLTGAKGNNLKDVT 627
            ++A+GT  +IM    SLTG++L+G+ S+ VP+ R    PN  + LKL  A+GNNLK+VT
Sbjct: 619 HIIAQGTPAEIMRNPKSLTGKYLTGELSVPVPERR---PPNHRRTLKLVNARGNNLKNVT 675

Query: 628 LTLPVGLFSCITGVSGSGKSTLINDTLFPIAQRLLNGATIIEPAPYRDISGMEHFDKVID 687
             +P+GLF+C+TGVSG GKSTL+ DT +    R LN A+   PAPY  I G+EH DK+ID
Sbjct: 676 AEIPLGLFTCVTGVSGGGKSTLLIDTFYKAIARKLNNASE-PPAPYDRIEGLEHIDKIID 734

Query: 688 IDQSPIGRTPRSNPATYTGIFTPVRELFSGVPESRTRGYTPGRFSFNVRGGRCEACQGDG 747
           IDQSPIGRTPRSNPATYTG FTP+RE F+G+PES+ RGY PGRFSFNV+GGRCEACQGDG
Sbjct: 735 IDQSPIGRTPRSNPATYTGAFTPIREWFAGLPESKARGYEPGRFSFNVKGGRCEACQGDG 794

Query: 748 VIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKSIHEVLEMTIEEAREFFDAVPALA 807
           VIK+EMHFLPD+YV CD CKGKRYNRETL++ +KGKSI +VL+MTIEEA EFF AVP + 
Sbjct: 795 VIKIEMHFLPDVYVTCDVCKGKRYNRETLDVLFKGKSIADVLDMTIEEAAEFFKAVPRVR 854

Query: 808 RKLQTMMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFAD 867
              +T+  VGL YI +GQ ATTLSGGEAQRVKLA+ELSKR TG+TLYILDEPTTGLHF D
Sbjct: 855 ETFKTLQRVGLDYIHVGQQATTLSGGEAQRVKLAKELSKRATGRTLYILDEPTTGLHFHD 914

Query: 868 IQQLLEVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILASGTPETVAKC 927
           + +LLEVLH+L  QGNT+VVIEHNL+VIKTADW++DLGPEGG GGGEI+A G PE + K 
Sbjct: 915 VAKLLEVLHELVAQGNTVVVIEHNLEVIKTADWVIDLGPEGGDGGGEIVAWGPPEDIVKA 974

Query: 928 KASHTARFLKPLLK 941
             S+T +FLKP+L+
Sbjct: 975 PRSYTGKFLKPVLE 988



 Score = 60.5 bits (145), Expect = 5e-13
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 8/136 (5%)

Query: 598 IAVPQERVKAAPNKVLKLTGAKGNNLKDVTLTLPVGLFSCITGVSGSGKSTLINDTLFPI 657
           I   ++   A+    + + GA+ +NLK+V +T+P       TG+SGSGKS+L  DT++  
Sbjct: 5   IKAKRQTPAASSRTAITIRGAREHNLKNVDVTIPRDKLVVFTGLSGSGKSSLAFDTIYAE 64

Query: 658 AQR------LLNGATIIEPAPYRDISGMEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPV 711
            QR             +E     D+  ++     I I+Q    + PRS   T T I+  +
Sbjct: 65  GQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYM 124

Query: 712 RELFS--GVPESRTRG 725
           R L++  GVP S   G
Sbjct: 125 RLLWARVGVPYSPATG 140