Pairwise Alignments

Query, 346 a.a., flagellar motor protein MotB from Erwinia tracheiphila SCR3

Subject, 345 a.a., Flagellar motor rotation protein MotB from Pseudomonas fluorescens FW300-N2E2

 Score =  203 bits (516), Expect = 6e-57
 Identities = 125/349 (35%), Positives = 194/349 (55%), Gaps = 14/349 (4%)

Query: 4   NTHPIIVVRKKKHKGNEGGHGSWKIAYADFMTALMAFFMVMWLISISTPAQRESIAEYFK 63
           N  PIIV R K+  G   G G+WKIA+ADF TA+MAFF+V+WL+S +TP Q+ +IA YFK
Sbjct: 3   NNQPIIVKRVKRIAGGHHG-GAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYFK 61

Query: 64  TPLKVAITGGTRTSE---SVSVIPGGGQDPTQKIGEVHKVVDMDAEK-----RNMDKIRL 115
            P+  + +G     +   S ++ P    +P  K       V +D+E+       +++ RL
Sbjct: 62  DPVGFSESGTPYIIDLGGSPTLAPENTLNPEVKSQPQPDKVTVDSEQVEGMAEQIERERL 121

Query: 116 NRLREKLDQLIEADPRLKALRQHLIINMVEEGLRIQIIDSQNRPMFKTGSAEVEPYMRDI 175
             L ++L   +E +P+L+  +  ++  +   GLRIQI+D++NRPMF +GSA ++PY  DI
Sbjct: 122 ELLLQELQNKVEENPQLQKFKDQILFEITPNGLRIQIMDAENRPMFDSGSARLKPYFEDI 181

Query: 176 LRAIAPILNNIPNKISLAGHTDDFQYATGDRGYSNWELSTDRANASRRELVIGGLDAGKM 235
           L A+A  +  +PNKIS++GHTD   Y  G   + NWELS +RANA+RR LV G     ++
Sbjct: 182 LLAMADTIKAVPNKISISGHTDAKPY-VGKGDFGNWELSANRANAARRALVAGSYPDEQV 240

Query: 236 LRVLGMADTMKLNNRGANDAVNRRISLLVLNHDTEMQIEKENSESDAVQIDNSDPANLKQ 295
            RV+G A +   + +   + VNRRI ++VL    +  I  E S++D   +D +       
Sbjct: 241 ARVVGYASSALFDRKDPFNPVNRRIDIVVLTRKAQQAI--EGSQTDDPPLDPAQGQGAPG 298

Query: 296 IVAPPIPSAANNNPAPQPSQAESAGSKNVPKAFSSGQPATPAQTERDSQ 344
             AP  P AA  +P   P+  +   +  + +  +    A P   E  +Q
Sbjct: 299 -EAPTTPGAA-ADPNALPADQQPVPAHELRERLNLFDDAAPKPAEPPAQ 345