Pairwise Alignments

Query, 520 a.a., carbohydrate porin from Erwinia tracheiphila SCR3

Subject, 526 a.a., carbohydrate porin from Rahnella sp. WP5

 Score =  639 bits (1647), Expect = 0.0
 Identities = 308/521 (59%), Positives = 392/521 (75%), Gaps = 10/521 (1%)

Query: 8   VAVTIGLLSAAGPAWSATDMSSIEARLAAMEKRLQAAEHCADVAENRAEAAEKQAQQLAS 67
           +AV IGL+ ++    +    S+IEAR AAMEKRLQ AE  A  AE RA  AE+Q +QL +
Sbjct: 8   LAVAIGLILSSAAQGADISASAIEARFAAMEKRLQLAESRAAKAEARATQAEQQVKQLET 67

Query: 68  AQQKNQTTTAQVEQRTARLEQRNSSEAEPKPLQVP-----QKSSDEGFEFHGYARSGLLM 122
               N+  T QV  +TA + Q+ +++   +   +        S + GF+F GYARSG++M
Sbjct: 68  RTASNEQQTRQVA-KTAEITQQQTADVAKRTETLAADNNKNSSDNSGFKFTGYARSGVIM 126

Query: 123 NSSAAKTQGGPTMTPAGETGGHVGRLGNEPDTYVEMNLEHKQTLANGATTRFKVMMADGQ 182
           N SA  T+ GP +TPAG+TGG VGRLGNE +TYVE+NLEH QT+A+GAT+R+KVM+ADGQ
Sbjct: 127 NDSATSTESGPYVTPAGQTGGAVGRLGNENNTYVELNLEHNQTMASGATSRYKVMLADGQ 186

Query: 183 RTYNDWTSNTSSLNVRQAFVELGHLPTFTDGFKDATVWAGKRFDRDNFDIHWLDSDVVFL 242
           R+YNDWT  TS LN+RQAFVELG LPTFT  +KD+T+WAGKRFDRDNFDIHWLDSD++FL
Sbjct: 187 RSYNDWTGATSDLNIRQAFVELGSLPTFTGPWKDSTLWAGKRFDRDNFDIHWLDSDIIFL 246

Query: 243 AGTGAGVYDMRWGEQGHSNLSLYGRTFGDIE---NSENTAQNYILTSNNFYGPLQFMVSG 299
           AGTG G+YD++WG+   SN SLYGR F D+E   N +   +NYI+T+NN+ GP Q+M+SG
Sbjct: 247 AGTGGGIYDVKWGDNLKSNFSLYGRNFDDLEDDNNDDTRIENYIVTANNYAGPFQWMLSG 306

Query: 300 MRAKDNDDRLDTEGNKVKSDAANEGVHALVGLHNDSFYGLREGLSKTALLYGHGLGAEVK 359
           +RAK+N DR +T  N + ++AA+ G H ++  H DSFYGLREG SKTALLYGHGLGAEVK
Sbjct: 307 LRAKNNQDRENTGTNGI-TNAADTGFHTMLAYHGDSFYGLREGSSKTALLYGHGLGAEVK 365

Query: 360 NVGSDGALLSQADTWRLATYGITPLGGGWHLAPALLAQTSRNRYAKGDSYQWATANLRVI 419
            +GSDG L   A T RLATYGITP+   W +APA+LAQ S++RY  GD Y+W T N R+I
Sbjct: 366 ALGSDGHLTDDASTLRLATYGITPISKNWSIAPAVLAQQSKDRYVSGDDYKWLTFNTRLI 425

Query: 420 QEINQNFEMQYEGSYQYMDLRPEGYNNRNAVSGGFYKLTVAPTLKAGDVGDFLKRPEIRL 479
           Q+I +NFE+ YEGSYQYMDL P+GY++ N V GGFYKLT APT K GD+ + L RPEIR 
Sbjct: 426 QQITENFELAYEGSYQYMDLNPQGYSDYNKVKGGFYKLTFAPTFKVGDISNMLSRPEIRF 485

Query: 480 FASWMDWDHHLDNYAGSDAFGSDGFKAGGEWNFGVQMETWF 520
           FA++MDW   LD+Y+ SD+FG+DGF AGG+WNFG+QMETWF
Sbjct: 486 FATYMDWSKELDSYSSSDSFGTDGFTAGGQWNFGIQMETWF 526