Pairwise Alignments

Query, 520 a.a., carbohydrate porin from Erwinia tracheiphila SCR3

Subject, 557 a.a., carbohydrate porin from Escherichia coli Nissle 1917

 Score = 50.8 bits (120), Expect = 1e-10
 Identities = 94/446 (21%), Positives = 166/446 (37%), Gaps = 62/446 (13%)

Query: 107 DEGFEFHGYARSGLLMNSSAAKTQGGPTMTPAGETGGHVGRLGNEPDTYVEMNLEHKQTL 166
           D GF + GY RSG           G P    AG     +GR GNE   + ++ L  +   
Sbjct: 142 DIGFSYQGYFRSGW-----GTGNHGSPQTYAAGS----LGRFGNEMSGWFDLTLNQRVYN 192

Query: 167 ANGATTRFKVMMADGQ--RTYND-WTSNTSSLNVRQAFVELGHLPT--FTDGFKDATVWA 221
            +G T    V+  DG   + YND W  ++++ N+ Q F ++ +L T  F    ++A  W 
Sbjct: 193 QDGRTAN-AVVTYDGNVGQQYNDAWFGDSANENIMQ-FSDI-YLTTRGFLPFAREADFWV 249

Query: 222 GK----RFDRDNFDIHWLDSDVVFLAG-----TGAGVYDMRWGEQGHSNLSLYGRTFGDI 272
           GK    +++    D   L +DV    G      G G++DM        ++ +Y R F   
Sbjct: 250 GKHKLPQYEIQMLDWKTLTTDVAAGVGIENWALGVGLFDM---SLSRDDVDVYSRDF--T 304

Query: 273 ENSENTAQNYILTSNNF----YGPLQFMVSGMRAKDNDDRLDTEGNKVKSDAANEGVHAL 328
             S+    +  +   N        L  M         D + D E +    +  +  +   
Sbjct: 305 RTSQMNTNSVDVRYRNIPLWDDATLSLMAKYSAPNKTDQQQDNENDDSYFEMKDSWMLTS 364

Query: 329 V---GLHNDSFYGLREGLSKTALLYGHGLGAEVKNVGSDGALL----SQADTWRLATYGI 381
           V    L  D+F      ++  +        ++  N  + G       +    WRL + G 
Sbjct: 365 VLRQNLQRDTFNEFTLQVANNSYASSFASFSDASNTMAHGRYYYGDHTNGIAWRLISQGE 424

Query: 382 TPLGGGWHLAPALLAQTSRNRYAKGDSYQWATANLRVIQEINQNFEMQYEGSYQYMDLRP 441
             L     +A AL+     + Y+          ++R +             ++    L  
Sbjct: 425 MYLTDNIIMANALVYSHGEDVYSYESGAHSDFDSIRTVIR-----PAWIWNTWNQTGLEL 479

Query: 442 EGYNNRNAVSGGF------YKLTVAPTLKAGDVGDFLKRPEIRLFASWMD-WDHHLDNYA 494
             +  +N    G       YK T+   LK G+      RPEIR + ++++  D+ L N+ 
Sbjct: 480 GWFKQQNKTQQGVTLNESAYKTTLWHALKVGE-SILGSRPEIRFYGTYINILDNELSNFK 538

Query: 495 GSDAFGSDGFKAGGEWNFGVQMETWF 520
            ++        +  E+  G+Q+E W+
Sbjct: 539 FNE-------NSKNEFMAGIQVEVWW 557