Pairwise Alignments

Query, 930 a.a., DNA polymerase I (EC 2.7.7.7) from Enterobacter asburiae PDN3

Subject, 949 a.a., DNA polymerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  714 bits (1842), Expect = 0.0
 Identities = 416/961 (43%), Positives = 588/961 (61%), Gaps = 51/961 (5%)

Query: 6   ENPLILVDGSSYLYRAYHAF--PPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFD 63
           +N L L+D  + +YRAY+AF   P  NS G  T A+ G +N L  ++ +  P+H  V FD
Sbjct: 4   DNKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKENPSHIGVAFD 63

Query: 64  AKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHTMVKAMGLPLLAVSGVEADDVIGTLAR 123
             G TFR E FE YK+ R   P+ +R  +  +  ++ A  +P+L V+G EADDVIGTLA 
Sbjct: 64  PSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEADDVIGTLAT 123

Query: 124 EAEKMGRPVLISTGDKDMAQLVTPGITLI---NTMTNTILGPEEVVTKYGVP-PELIIDF 179
           EA + G    + T DKD  QLVT  + +    +T    ++G EEV  K+ +  P  +ID 
Sbjct: 124 EAGRQGITTYMMTPDKDYGQLVTDNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPAQVIDM 183

Query: 180 LALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLSFRGAKTMAGKLEEN 239
           L LMGD+SDNIPG PGVGEKTAQ L+   G ++ L   +D++ G        +  K+E N
Sbjct: 184 LGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKG-------ALKTKVETN 236

Query: 240 KEVAYLSYKLATIKTDVELELGCEQLEVQQPSADDLLSLFKKYEFKRWITDV-----EAG 294
           KE+   S  LATIK DV ++L  ++L  +Q   D L  +F++ EF+  I  V      AG
Sbjct: 237 KELITFSKFLATIKIDVPIQLEMDKLVREQADEDSLRQIFEELEFRTLIDRVLKKENSAG 296

Query: 295 KWLQAKGAKPAAK----------PKETIVVDAEEQAE------EEAVALSFDNYETILEE 338
               A G+K A            P+E   +  +  A        EA   + +  ET+  +
Sbjct: 297 GVTMATGSKTATAKSAPSPLPLFPEEGGAIQGDLFANFTGNEAGEAKKSNLETLETLNCD 356

Query: 339 SQLIAW-------IEKLKKAPVFAFDTETDSLDNISANMVGLSFATEPGIAAYVPVAHDY 391
            QLI         I+KL  + + + DTET   + + A +VG+SF+     A YVPV  + 
Sbjct: 357 YQLIDTEKKRAEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSITENQAFYVPVPDNR 416

Query: 392 LDAPEQISRERVLELLKPILEDEKALKVGQNLKYDRGILQNYGIELRGIAFDTMLESYIL 451
            +A       +++   +P+ E+E +LKVGQN+KYD  +L+NYG++++G  FDTM+  Y+L
Sbjct: 417 EEAL------KIVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGALFDTMIAHYVL 470

Query: 452 DSVAGRHDMDSLSDRWLKHKTITFEEIAG-KGKNQLTFNQIALEEAGRYAAEDADVTLQL 510
                RH MD L++ +L ++TI  +E+ G KGKNQ     +  ++  RYA EDADVTL+L
Sbjct: 471 QPEL-RHGMDYLAEIYLHYQTIHIDELIGPKGKNQKNMRDLDPKDIYRYACEDADVTLKL 529

Query: 511 HLKMWPKLQKHEGPLNVFQHIEMPLVPVLSRIERNGVKIDPTVLHNHSGELAQRLTELEQ 570
              +  +L++++    +F  IEMPLVPVL  IERNGV +D   L   S     ++  +EQ
Sbjct: 530 KNVLEKELKENDAE-RLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQ 588

Query: 571 KAHELAGEPFNLSSPKQLQTILFEK-QGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 629
           + +ELAGE FN++SPKQ+  +LF+K + I+  KKT  G   TSEEVLE L   +P+ + I
Sbjct: 589 EIYELAGETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 648

Query: 630 LQYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVAATGRLSSTDPNLQNIPVRNEEGR 689
           L++RGL KL  TY D LP +INP+TGRVHTS++Q V +TGRLSS++PNLQNIP+R+E G+
Sbjct: 649 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVTSTGRLSSSNPNLQNIPIRDENGK 708

Query: 690 RIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLD 749
            IR+AFI  E  L  SADYSQIELRIMAHLS DK ++ AF    DIH ATAA+++ + L 
Sbjct: 709 EIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKIYKIDLK 768

Query: 750 SVTNEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQKYMDLYFERYPGVLEYMERTRA 809
            V ++ RR AK  NFG+IYG+S FGL+ ++N+ RKE+++ +D YFE YP V  YME++  
Sbjct: 769 DVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPSVKAYMEKSIQ 828

Query: 810 QAKEKGYVETLDGRRLYLPDIKSSNAARRAGAERAAINAPMQGTAADIIKRAMIAVDAWL 869
            A+EKGYVET+  R+ +LPDI S NA  R  AER AINAP+QG+AADIIK AM  +    
Sbjct: 829 IAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRF 888

Query: 870 EEEKPRVKMIMQVHDELVFEVHKDDLDAVSKKIHELMESSMTLDVPLLVEVGSGENWDQA 929
           + E  + KMI+QVHDEL F V  ++ + V + + E ME +  + VPL  + G G+NW +A
Sbjct: 889 QTEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEEMEHAYRMHVPLKADCGWGKNWLEA 948

Query: 930 H 930
           H
Sbjct: 949 H 949