Pairwise Alignments

Query, 445 a.a., putative efflux protein, MATE family from Enterobacter asburiae PDN3

Subject, 454 a.a., putative Na+-driven multidrug efflux pump (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  103 bits (256), Expect = 1e-26
 Identities = 97/376 (25%), Positives = 170/376 (45%), Gaps = 17/376 (4%)

Query: 9   KALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAIGATATSFLFMLLLFLRMS 68
           K L + A+P + +N+   L G  D  V+G  D    +  VAIG+     +  ++L +   
Sbjct: 13  KVLLQYAVPFLIANVLQALYGGADLFVVGQYDDSASVAAVAIGSQVMQTITGIILGITTG 72

Query: 69  TTGLTAQAYGAKDPLRLARALVQPLILALGAGALIVLFRTPLIDLALHVVGGSEAVLAQA 128
           TT L A A GAKD  ++A  +   + L    G L+ L           ++      +A  
Sbjct: 73  TTVLIAIATGAKDDKKVAFTIGSSVWLFSIIGVLLTLVMVVFHGRIAELMHTPIEAMADT 132

Query: 129 QRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILLVVGNLLNIVLDVWLVMGLHMNVR 188
           + ++ +        +   V+ G L G+  ++ P+  + +  ++NIVLD  LV   H+   
Sbjct: 133 KSYILVCSAGILFIVGYNVVCGILRGLGDSKTPLYFVALACVINIVLDFILVGYFHLGAT 192

Query: 189 GAALATAIAEYGTFIIGLWMVWRVLAMRGISLALLKTAWRGN---IRRLLALNRDIMLRS 245
           GAA+AT  A+  +F+I LW ++R     G      +   R N    ++++ L   I L+ 
Sbjct: 193 GAAVATITAQGVSFMISLWFLYR----HGFHFEFTRKDIRLNRNLAKKVMTLGAPIALQD 248

Query: 246 LLLQLCFGALTVFGARLGPEIVAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARESG 305
            L+ + F  +TV   ++G    A   V+  ++ F        + AV   + Q YGA   G
Sbjct: 249 ALINISFLIITVIVNQMGVIASASLGVVEKIIVFAMLPPMAISSAVATMTAQNYGA---G 305

Query: 306 QLRDVWRAACRQSGL-VALAFGL---VYA-CLGEQIVALLTSIPALRELASHYLIWQVIL 360
            ++ + R  C  SG+ +A  FG+   VY+  L E + A  T   A+  +A+ YL    I 
Sbjct: 306 LIQRMNR--CLASGIGIAFVFGVSVCVYSQFLPETLTAFFTKDAAVVSMAAEYLRGYSID 363

Query: 361 PVVGVWCYLLDGMFIG 376
            +V  + + ++  F G
Sbjct: 364 CIVVSFVFCINSYFSG 379