Pairwise Alignments

Query, 631 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

Subject, 499 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  301 bits (772), Expect = 3e-86
 Identities = 193/505 (38%), Positives = 278/505 (55%), Gaps = 43/505 (8%)

Query: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLL 65
           T FADLGL   +L A+ D GY  P+PIQ   IP  L  RD+LG+AQTG+GKTA+F LP+L
Sbjct: 2   TNFADLGLSQKVLSAVTDAGYTIPTPIQVGAIPPALQRRDILGIAQTGTGKTASFVLPML 61

Query: 66  NNIDPD---LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
             ++      R P+ L+L PTRELA QVAE   ++ K+ + +N+  L GG  +D Q R L
Sbjct: 62  TLLEKGRARARMPRTLILEPTRELAAQVAENFDKYGKNHK-LNIALLIGGVSFDEQDRKL 120

Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPDGHQ 182
            +G  +++ TPGRLLDH +RG L ++ +  LV+DEAD ML MGFI D+E I   IP   Q
Sbjct: 121 ERGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQ 180

Query: 183 TALFSATMPEAIRRITKRFMKDPQEVRIQSSVTTRPDISQSYWSVYGMR-KNEALVRFL- 240
           T  FSATMP  I+++  RF+++P+ + +    +T   ++Q + + +G   +  A++R L 
Sbjct: 181 TLFFSATMPPEIQKLADRFLQNPERLEVARRSSTAITVTQRFVAAHGKDYEKRAVLRELI 240

Query: 241 -EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 299
              ED   AIIF   K    E+  +L+R G++  AL+GDM+Q  R   L   KDG + +L
Sbjct: 241 RSQEDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIKLL 300

Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359
           +A+DVAARGLD+  +S V N+D+P+ +E YVHRIGRTGRAGR+G A   V  RE +    
Sbjct: 301 VASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGAAFTIVTKRETKFSDA 360

Query: 360 IERTMKLTIPEADLPNADLLGKRRLEKFAAKVQQQLESSDLDQYRALLSQIQPVAEGEEL 419
           IE   KL   + +  N DL          +++ + +ES D  + R         ++G + 
Sbjct: 361 IE---KLIGQKVEWFNGDL----------SELPEPMESHDSRRDRG--------SDGRKD 399

Query: 420 DMETLAAALLKMAQGERSLIVPPDAPMRPKREFRDRDD--RFERRGDRNDRNDRGPRGDR 477
                   +      +R  +              +R D  + ER  D  DR++   R DR
Sbjct: 400 RKRERPGKV----HADRKPVTASGNNTEELETVPERVDAVKIERNADSKDRHN--GRSDR 453

Query: 478 PERG-------GEDRPRRERRDAGD 495
           P R          DR +R RRD  D
Sbjct: 454 PGRAQNAANDDNRDRRQRNRRDHDD 478