Pairwise Alignments

Query, 631 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

Subject, 599 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  572 bits (1474), Expect = e-167
 Identities = 318/613 (51%), Positives = 414/613 (67%), Gaps = 25/613 (4%)

Query: 1   MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAF 60
           M+  E TF +LGL  P+L AL++LGYEKP+PIQA  I  L++G+D+LG AQTG+GKT AF
Sbjct: 1   MSSSEKTFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAF 60

Query: 61  SLPLLNNIDPDLRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLR 120
           +LPLLN IDP+   PQILVLAPTRELAVQVAEA   +SK M+G++V+ +YGGQ    QL 
Sbjct: 61  ALPLLNAIDPNRNVPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLN 120

Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPDG 180
           ALR+GPQIVVGTPGR++DH++RGTL L  L+ LVLDEADEML+MGFI+D+E I+   P  
Sbjct: 121 ALRRGPQIVVGTPGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWILEHTPQE 180

Query: 181 HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFL 240
            Q ALFSATMPE I+R+  ++++ P  + I +S TT   I Q +  V    K EALVR L
Sbjct: 181 RQLALFSATMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRVL 240

Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300
           E E+ +  IIFVRT+N+ +E+AE LE  GY S+ L+GDMNQ  RE+ +++LK G+LDILI
Sbjct: 241 EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILI 300

Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360
           ATDVAARGLDVERI  V+NYDIP D+E+YVHRIGRTGRAGR G A+LFV +RE R+LR I
Sbjct: 301 ATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI 360

Query: 361 ERTMKLTIPEADLPNADLLGKRRLEKFAAKVQQQLESSDLDQYRALLSQIQPVAEGEELD 420
           ER  K  I   ++P+ + + +RRL +   +V   +++  LD     ++Q+    +  E+D
Sbjct: 361 ERATKSRISPMNVPSPETVAERRLSRLGEQVSNTIDNESLDFMHGAVAQL---CQQLEVD 417

Query: 421 METLAAALLKMAQGERSLIVPPDAPMRPKREFRDRDDRFERRG-DRNDRNDRGPRGDR-- 477
            E LAAALL M Q ER L +PP        + R RD R ER   DR DR+DR PRG R  
Sbjct: 418 TEVLAAALLNMVQQERPLQLPP-------IQERQRDSRDERNSRDRGDRSDRAPRGRRES 470

Query: 478 ---PERGGEDRPRRERRDAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKL 534
              P   G+    ++  D   M  Y ++VGRD GV V +IVGA+ANE +I SRYIG I+L
Sbjct: 471 RPTPANLGQADTLKDHPDV-KMCRYVLDVGRDHGVGVGNIVGAVANEANIDSRYIGQIQL 529

Query: 535 FASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLMGD--AQPRPDRGGERRGGGRSFGG 592
           F   ++I+LP+GMP +VLQH  + R+  KP+N++  G        D    RR   R   G
Sbjct: 530 FDQITSIDLPEGMPKDVLQHLKKVRVCGKPLNIREAGSEIVNASDDNRAPRR---RKPVG 586

Query: 593 ER---REGGRSEG 602
           ER   R+G R  G
Sbjct: 587 ERKSHRKGNRDNG 599