Pairwise Alignments

Query, 631 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

Subject, 563 a.a., Probable cold-shock DeaD-box protein A homolog DeaD (ATP-dependent RNA helicase dead homolog) from Mycobacterium tuberculosis H37Rv

 Score =  484 bits (1245), Expect = e-141
 Identities = 269/583 (46%), Positives = 372/583 (63%), Gaps = 41/583 (7%)

Query: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLN 66
           TFADL +   +L A+ D+GYE P+ IQA  IP L++G DV+G+AQTG+GKTAAF++P+L+
Sbjct: 14  TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73

Query: 67  NIDPDLRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126
            ID   + PQ LVL PTRELA+QVAEA   +  ++  +NV+ +YGG  Y VQL  LR+G 
Sbjct: 74  KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133

Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTALF 186
           Q+VVGTPGR++DHL+R TLDLS++  LVLDEADEML MGF +DVE I+++ P+  Q ALF
Sbjct: 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193

Query: 187 SATMPEAIRRITKRFMKDPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFD 246
           SATMP AIR+++ +++ DP EV  ++      +ISQSY  V   RK +AL R LE E F+
Sbjct: 194 SATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQV--ARKMDALTRVLEVEPFE 251

Query: 247 AAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306
           A I+FVRTK AT E+AE L   G+++AA++GD+ QA RE+T+  L+DG +DIL+ATDVAA
Sbjct: 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311

Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366
           RGLDVERIS V+NYDIP D+ESYVHRIGRTGRAGR+G AL+FV  RE  LL+ IE+  + 
Sbjct: 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQ 371

Query: 367 TIPEADLPNADLLGKRRLEKFAAKVQQQLESSDLDQYRALLSQIQPVAEGEELDMETLAA 426
           T+ EA LP  + +  +R+ KFA  +   L    ++ +R L+ + +      ++ M  +AA
Sbjct: 372 TLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYE---REHDVPMADIAA 428

Query: 427 ALLKMAQGERSLIVPPDAPMRPKREFRDRDDRFERRGDRNDRNDRGPRGDRPERGGEDRP 486
           AL    +G  + ++ PD P+                     R +R  R DRP+R     P
Sbjct: 429 ALAVQCRGGEAFLMAPDPPL--------------------SRRNRDQRRDRPQR-----P 463

Query: 487 RRERRDAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG 546
           +R      D+  YR+ VG+   +    IVGAIANEG +     G I++    S +ELP  
Sbjct: 464 KRRP----DLTTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAK 519

Query: 547 MPGEVLQHFTRTRILNKPMNMQLMGDAQP-RPDRGGERRGGGR 588
           +P   L+   +TRI        ++ D +P RP     R  GG+
Sbjct: 520 LPRATLKKLAQTRISG------VLIDLRPYRPPDAARRHNGGK 556