Pairwise Alignments

Query, 298 a.a., tyrosine recombinase XerD from Enterobacter asburiae PDN3

Subject, 311 a.a., site-specific tyrosine recombinase XerD from Sinorhizobium meliloti 1021

 Score =  238 bits (606), Expect = 2e-67
 Identities = 143/303 (47%), Positives = 185/303 (61%), Gaps = 15/303 (4%)

Query: 6   ALIEQFLDALWLEKNLAENTLSAYRRDLTMLVEWLAHRGLSLASAQRDDLQALLGERIAG 65
           A +E FL+ +  E+  A NTL +Y RDL     +L  RG  L  A  DDL++ L      
Sbjct: 7   AYVEAFLEMMSAERGAAANTLQSYERDLEDARSFLRSRGTGLTDASADDLRSYLSHLAGQ 66

Query: 66  GYKATSSARLLSAMRRLFQHLYREKIREDDPSALLASPKLPQRLPKDLSEAQVERLL--- 122
           G+KA+S AR LSA+R+ ++ LY E +R DDP+ +L +PK  + LPK LS   V RL+   
Sbjct: 67  GFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRLIGQA 126

Query: 123 ----QSPAVDLPLELRDKAMLELLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERL 178
               +S + D+  +LR  A++ELLYATG+RVSELV L  S ++     + + GKGNKERL
Sbjct: 127 EAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGKGNKERL 186

Query: 179 VPLGEEAVYWLETYLEHGRPWLLNGTSIDV--LFPSQ-RAQQMTRQTFWHRIKHYATLAG 235
           VPL + A+  +  Y E      L   S D   LFPS  ++  + RQ F   +K  A  AG
Sbjct: 187 VPLSQAAIRAMRAYGE-----ALQEESADSPWLFPSNGKSGHLPRQVFARDLKSLAARAG 241

Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295
           I    +SPHVLRHAFA+HLL +GADLR VQ LLGHSD+STTQIYTHV  ERL  L Q HH
Sbjct: 242 IRVAAISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLVQNHH 301

Query: 296 PRA 298
           P A
Sbjct: 302 PLA 304