Pairwise Alignments

Query, 1180 a.a., DNA helicase/exodeoxyribonuclease V, beta subunit (EC 3.1.11.5) from Enterobacter asburiae PDN3

Subject, 1189 a.a., ATP-dependent nuclease/helicase from Sinorhizobium meliloti 1021

 Score = 96.7 bits (239), Expect = 1e-23
 Identities = 141/584 (24%), Positives = 249/584 (42%), Gaps = 92/584 (15%)

Query: 329 TRAMTEIRDAVARE----KRRRGELGFDDMLSRLDAALC-SENGEALAAAIRTRFPVAMI 383
           TRA   + + + R+    K+ R +L F+D++ R  A L  S+ G  +   +       ++
Sbjct: 359 TRAALVLAERLNRDYEALKKARSQLDFEDLIHRTAALLARSDVGAWVHYKLDQGIDHILV 418

Query: 384 DEFQDTDPQQYRIFRRI--------WRQQPGTALLLIGDPKQAIYAFRGA--------DI 427
           DE QDT P Q+ I + +          +     +  +GD KQ+IY+F+GA          
Sbjct: 419 DEAQDTSPAQWTIIQSLAADFFAGETARADDRTIFAVGDEKQSIYSFQGARPERFSREST 478

Query: 428 FTYMKARSEVDAHYT---LDTNWRSSPGMVESVNALFSRMDTAFMFREIPFQPVKFAEKN 484
            T  + R+  + H++   L  ++RS+  ++ +V+ +F+           P      + ++
Sbjct: 479 LTERRVRAG-NKHFSPIRLQLSFRSTVDVLSAVDTVFAN----------PGNARGLSARS 527

Query: 485 ASLRFEFNGETQP-AMNFWLLDGEGYGVADYQ--------------NAMAQHCAAQIRDW 529
            ++    N   QP A++ W +       ++                N +A+  AA + DW
Sbjct: 528 EAIVHASNRIGQPGAVDLWDVIAPEPAASEEDWTAPFDATPERAPVNILARRIAAVLEDW 587

Query: 530 LSAGAHGKALLWKGDKPAPVKASDITVLVRSRQEA--ALIRDALTLLNIPSVYLSNRDSV 587
           +      + ++ KG + A ++  D+ VLVR R     AL R      NIP V  ++R  +
Sbjct: 588 IGR----ETVIEKGVRRA-MRPGDVIVLVRKRDAFVNALTRALKRRGNIP-VAGADRLVL 641

Query: 588 FETLEAQEMLWLLQAVLAPERESTLRSALASAMLGLNARDIDAL----NNDEAAW----D 639
              +  Q+++ L + VL PE + +L + L S +L L   D+  L       E+ W     
Sbjct: 642 TSHIAVQDLIALGRFVLLPEDDLSLAALLKSPLLDLGEEDVFELAARRTEGESLWRRLRQ 701

Query: 640 AVVEEFVRYREKWQKRG-VMAMVRELMAQRHIAENMLATAGGERRLTDIL--HISELLQE 696
           A  EE  RY E  +       + REL+     A  +L   GG R     L   +S++L E
Sbjct: 702 AGAEETSRYHEAVRTLSRYSGLARELLPHDFYAR-VLGADGGRRAFLARLGSEVSDILDE 760

Query: 697 AGT-QLESEHALVRWLAQQIADPNSNSSSQQMRLESDKHLVQIVTIHKSKGLEYPLVWL- 754
             T  L+ E   +  L   I+     + + +   + ++  V+++T+H +KGLE P+V+L 
Sbjct: 761 FLTFALDHERNGLPGLQAFISTLEIEAPTVKREQDKERDEVRVMTVHAAKGLEAPVVFLV 820

Query: 755 ----PFIANYRVQDQAFYHDRESFEAVLDL------SNAESSLELAEAERL-----AEDL 799
                     +V D  F    +   + L +       +A +SL  A+ ERL      E  
Sbjct: 821 DGGGEAFVRQQVSDLRFLEKAQVDHSTLTVPVWRAPGSAPNSLIAADNERLKKLAEEEYR 880

Query: 800 RLLYVALTRSVWHCSLGVAPLFRRRGEKTGESDFHLSALGRLIQ 843
           RLLYV +TR+          +   RG++     +H    G L Q
Sbjct: 881 RLLYVGMTRAADRLI-----VCGYRGQRQNTDTWHSMVQGTLAQ 919



 Score = 41.6 bits (96), Expect = 4e-07
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 22/144 (15%)

Query: 21  IEASAGTGKTFTIAALYLRLLLGLGGNAAFPRPLSVEELLVVTFTEAATAELRGRIRSNI 80
           + A+AG+GKT  +    +RLLL      A  RP ++   L +T+T+AA +E+  R+   +
Sbjct: 36  VSANAGSGKTHVLTQRVIRLLL------AGCRPSAI---LCLTYTKAAASEMSNRVFEKL 86

Query: 81  HELRIACLRQSTDNPLYASLLEEIADKQQAAQWLLLAERQMDEA-------SVFTIHGFC 133
            E        + D+      +E I  K+     +  A R    A        + TIH FC
Sbjct: 87  AEW------ATLDDTTLEKRIEAIEGKRPPTAKIQEARRLFARALETPGGLKIQTIHAFC 140

Query: 134 QRMLSLNAFESGMLFEQQLIEDES 157
           + +L     E+ +     +++D +
Sbjct: 141 EALLHQFPLEANVAGHFSVLDDRA 164