Pairwise Alignments

Query, 606 a.a., DNA helicase/exodeoxyribonuclease V, alpha subunit (EC 3.1.11.5) from Enterobacter asburiae PDN3

Subject, 662 a.a., exodeoxyribonuclease V, alpha subunit (RefSeq) from Shewanella loihica PV-4

 Score =  399 bits (1026), Expect = e-115
 Identities = 260/642 (40%), Positives = 356/642 (55%), Gaps = 71/642 (11%)

Query: 17  RHLDVQFAMMVAGEEPAVMLAAAILSKDAGEGHVCLPLSRLAVDEKMPPALQACF----- 71
           RH  +Q   + +  +    L  A+LS+   + H CLPL+++  +  +      C      
Sbjct: 26  RHFALQMQALHSDGDDLFTLICALLSRQLSQQHTCLPLTQIDKNNPLHEQQPQCQLELTP 85

Query: 72  -ALLGDAVDWQEILLGSPAVSGADTGTPMILVGERLYLNRLWRNELTVARFFSETNAPLP 130
            AL G    +Q I   SPA    +  TP+IL G+RLYL R ++ E  VA   +  N P+ 
Sbjct: 86  QALAGQLTQYQAI---SPA--DGELNTPLILDGDRLYLQRYYQFETQVAERLTRLNQPIT 140

Query: 131 CDEA-QLRQTLDTLFTSD-DATDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALI 188
                ++   L+ LF    +  DWQKVA A A +++++VI+GGPGTGKTTTV KLL   +
Sbjct: 141 VAAPDKVACILNILFAGQAEKPDWQKVATATAFSQKLAVITGGPGTGKTTTVTKLL---L 197

Query: 189 QLSSEQKCRIRLAAPTGKAAARLTESLGGALQKLP---------LTREQLALFPNEASTL 239
            L  EQ+  I+L APTGKAAARL+ES+  +  +L          L  EQL   P EA+TL
Sbjct: 198 LLCLEQQLTIKLVAPTGKAAARLSESIKASKARLAQELAPYGDELDLEQLKQVPEEAATL 257

Query: 240 HRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMIDLTMMSRLIDALPPHARVIFLGDRDQ 299
           HRLLG  PGS R R+H  NPL LD+L++DEASM+DL MM +L++ALP H R+I LGD+DQ
Sbjct: 258 HRLLGVIPGSHRFRHHKDNPLRLDLLILDEASMVDLPMMHKLLEALPEHTRLILLGDQDQ 317

Query: 300 LASVEAGAVLGDICTYAS----------LGYTAERAQELARLTGCSLTSENHSLAGALRD 349
           LASVEAGAVL DIC              + Y+ E+A  L++LT   L S       AL D
Sbjct: 318 LASVEAGAVLADICAGLKQTSSQESGWRMRYSQEKAALLSQLTNEDL-SNYIDARPALGD 376

Query: 350 SLCLLQKSYRFGSDSGIGQLAAAVNRGDRRTTTAVFDGTFTDI----EKKSLQSGEEYQA 405
           SL +L  S+RF  D+GIGQLA AVNR D     +V+   + ++     + S Q     +A
Sbjct: 377 SLAMLMHSHRFKGDAGIGQLAGAVNRRDLTGILSVWQKGYDELSWLEHQLSPQGNAGLKA 436

Query: 406 MLDDALQGYQHFLTGVQQQSTPE--------------------QVIAAFGEYQLLCALRE 445
           ++  ++  Y+ +L  V   +  E                    Q+I  F  +++LCA+R 
Sbjct: 437 LMAQSVDKYRPYLDLVGHLANKEQAQEVDKEADQQLDLDEIANQIITRFNNFRILCAMRA 496

Query: 446 GPFGVRGLNDRLEQLLAQKRKINRTPHSRWYEGRPVMISRNDSTLGLFNGDIGIALDCGQ 505
           G +GV G+N  + Q L   + I   P S +Y GRP++I  ND  LGLFNGDIG+ L  G 
Sbjct: 497 GEYGVEGINAAVTQALKDAQLIQ--PSSEFYAGRPIIIQSNDYNLGLFNGDIGVILP-GH 553

Query: 506 G----LRVWFQMPDGSVKSFQPSRLPEHETAWAMTVHKSQGSEFNHAALILPTQLS---- 557
           G    L  +F   DGS+    P+RLP HET +AMTVHKSQGSEF   A +LP + S    
Sbjct: 554 GPTHRLMAYFVQADGSLLKVLPARLPSHETCYAMTVHKSQGSEFQQVAFVLPPRPSVAQR 613

Query: 558 PVITRELIYTAITRARQRLSLYADERVLVQAIATRTERRSGL 599
            ++T+EL+YTAITRA+   S    + V   A +  T R SGL
Sbjct: 614 QLLTKELVYTAITRAKGHFSCLGSQAVFEAACSQVTLRASGL 655