Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas fluorescens FW300-N2C3

 Score = 1228 bits (3177), Expect = 0.0
 Identities = 627/1138 (55%), Positives = 823/1138 (72%), Gaps = 6/1138 (0%)

Query: 9    LPVKAGDQRQLGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIRQFTDSL-V 67
            LP  AG Q   G L GAA +  +AE A       +L+  D Q+A RL  E+  F   L V
Sbjct: 9    LPAAAGKQHW-GNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPV 67

Query: 68   FSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSYLHGHA 127
                DWETLPYD FSPHQ+IIS R+++LY+LP +  GVL+VP+ T + R+ P  +L G +
Sbjct: 68   LHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPTQFLLGSS 127

Query: 128  LVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPYRLDFFDD 187
            LV+  GQ+L  + +R +L+ +GYR VD V EHGE+A RGAL+DL+PMGS  PYR+D FDD
Sbjct: 128  LVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDD 187

Query: 188  EIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRDAEHIYQQ 247
            EI++LR FD + QR++++V+SI LLPA EFP  K A+  F++++R++F+V      I+Q 
Sbjct: 188  EIETLRTFDPENQRSIDKVQSIRLLPAKEFPLQKDAVTRFKARFRERFDVDFRRCPIFQD 247

Query: 248  VSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETRARFENRG 307
            +S G  PAGIEY+ PLFF E    LF Y P +T + +   I+ +A  F ++ R R+E R 
Sbjct: 248  LSSGITPAGIEYYLPLFFEET-STLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRYEERR 306

Query: 308  VDPMRPLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPDLAVQAQQ 367
            VDP RPLLPP  L+L  ++  A LK WPR+      +           + LPDLA++A+ 
Sbjct: 307  VDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPAKALPDLAIEAKA 366

Query: 368  KSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSE-ATGNGRY-L 425
              PL  L  FL++F G V+F+ ES GRRE L ELL R+K+ PK +    +   G  R  +
Sbjct: 367  TQPLAALASFLDAFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAGKDRLAI 426

Query: 426  MIGAAEHGFIDTLNNLALICESDLLGERVA-RRRQDSRRTINPDTLIRNLAELHPGQPIV 484
             I     G +     LAL+ ES L G+RV  RRR++ R     D +I+NL EL  G P+V
Sbjct: 427  TIAPLNDGLVLDDPALALVAESPLFGQRVMQRRRREKRADAANDAVIKNLTELREGAPVV 486

Query: 485  HLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHK 544
            H++HGVGRY G+ TLE      E+L L YA  AKLYVPV++LHLI+RY G  +  APLH+
Sbjct: 487  HIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDALAPLHR 546

Query: 545  LGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFETTPD 604
            LG + W +A++KAAE+VRDVAAELLDIYA+RAA++G+AF   K  Y+ F   FPFE T D
Sbjct: 547  LGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYETFSAGFPFEETVD 606

Query: 605  QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTLLAQQ 664
            Q   I AV +DM  P  MDRLVCGDVGFGKTEVAMRAAF+AV   KQVA+LVPTTLLAQQ
Sbjct: 607  QQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPTTLLAQQ 666

Query: 665  HFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKWKDLG 724
            H+++FRDRFA+WPV +E++SRF+STKE    + + +EGKIDI+IGTHKLLQ DVK K+LG
Sbjct: 667  HYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVAELAEGKIDIVIGTHKLLQDDVKIKNLG 726

Query: 725  LLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 784
            L+I+DEEHRFGVR KE++KA+R++VDILTLTATPIPRTLNMA+SGMRDLSIIATPPARRL
Sbjct: 727  LVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRL 786

Query: 785  AVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAIGHGQ 844
            +V+TFV E +   V+EA+LRE+LRGGQVYYL+NDV+ I+K A  LAELVPEARI IGHGQ
Sbjct: 787  SVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQ 846

Query: 845  MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 904
            MRERELE+VM+DF+H+RFNVL+ +TIIETGID+P+ANTIIIERAD FGLAQLHQLRGRVG
Sbjct: 847  MRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVG 906

Query: 905  RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQS 964
            RSHHQAYA+LLTP  + +T DA+KRLEAIA+ +DLGAGF LAT+DLEIRGAGELLG+ QS
Sbjct: 907  RSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQS 966

Query: 965  GSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRL 1024
            G ++ +GF+LYME+LE AV +++ G +P+L+       E+ LR+P+L+P+D++PDV+ RL
Sbjct: 967  GQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEDYLPDVHARL 1026

Query: 1025 SFYKRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKG 1084
              YKRIASA  E  L++++VE+IDRFGLLP+P +NL+    L+ +A++LGI+K++G   G
Sbjct: 1027 ILYKRIASASDEEGLKDLQVEMIDRFGLLPEPTKNLVRTTLLKLKAEQLGIKKVDGGPNG 1086

Query: 1085 GVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFMRQL 1142
            G IEF  +  V+P+ LI L+Q QP+ ++ +G T  KF   +   + R + V     +L
Sbjct: 1087 GRIEFEAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERAEERFNTVEALFERL 1144