Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1148 a.a., transcription-repair coupling factor (mfd) from Pseudomonas stutzeri RCH2

 Score = 1259 bits (3259), Expect = 0.0
 Identities = 634/1138 (55%), Positives = 838/1138 (73%), Gaps = 3/1138 (0%)

Query: 9    LPVKAGDQRQLGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIRQFTDSL-V 67
            LP  +G Q   G L GAA +  +AE A       +L+  D Q+A RL +E+  F   L V
Sbjct: 9    LPAASGKQHW-GNLPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAFFAPGLPV 67

Query: 68   FSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSYLHGHA 127
                DWETLPYD FSPHQ+I+S R+S LYQLP +  GVL+VP+ T + R+ P  +L G +
Sbjct: 68   LHFPDWETLPYDIFSPHQDIVSQRISALYQLPELSHGVLVVPITTALHRLAPKRFLLGSS 127

Query: 128  LVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPYRLDFFDD 187
            LV+  GQ+L  + +R +L+ AGYR VD V EHGE+A RGAL+DL+PMGS  PYR+D FDD
Sbjct: 128  LVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPYRIDLFDD 187

Query: 188  EIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRDAEHIYQQ 247
            EI++LR FD + QR++++VESI LLPA EFP  K A+  FR+++R++F+V      IYQ 
Sbjct: 188  EIETLRTFDPENQRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFRRCPIYQD 247

Query: 248  VSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETRARFENRG 307
            +S G  PAGIEY+ PLF+ E    LF Y P ++ + +   I+ +A +F S+ R R+E R 
Sbjct: 248  LSTGITPAGIEYYLPLFYEETA-TLFDYLPEDSQVFSLPGIEQAAEQFWSDVRNRYEERR 306

Query: 308  VDPMRPLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPDLAVQAQQ 367
            VDP RPLLPP  L++  ++  A LK WPR+      +           + LP+LA++++ 
Sbjct: 307  VDPERPLLPPAELFMPVEDCFARLKLWPRVVASQQDVESGIGRERFNAQALPELAIESKA 366

Query: 368  KSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSEATGNGRYLMI 427
              PL  LR+FLES+ G V+F+ ES GRRE L ELL R+K+ P+ +   ++   + + L I
Sbjct: 367  SEPLGKLRQFLESYPGRVLFTAESAGRREVLLELLARLKLRPQEVDGWTDFLASDQRLAI 426

Query: 428  GAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPGQPIVHLE 487
              A       L+++AL+ ES L G+RV +RR+  +     + +I+NL EL  G P+VH++
Sbjct: 427  TIAPLDEGLQLDDVALVAESPLFGQRVMQRRRREKSRDGGENVIKNLTELREGSPVVHID 486

Query: 488  HGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGG 547
            HGVGRYQG+TTLE  G   E+L+L YA +AKLYVPV+SLHLI+RY G  +  APLH+LG 
Sbjct: 487  HGVGRYQGLTTLEIEGQAQEFLLLQYAEEAKLYVPVASLHLIARYTGSDDALAPLHRLGS 546

Query: 548  DAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFETTPDQAQ 607
            + W +A++KAAE+VRDVAAELLDIYA+RAA++G+AFK  +  Y+ F   FPFE TPDQ  
Sbjct: 547  ETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPQVDYETFAAGFPFEETPDQQA 606

Query: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTLLAQQHFD 667
            AI+AV  D+     MDRLVCGDVGFGKTEVAMRAAF+AV   +QV VLVPTTLLAQQH++
Sbjct: 607  AIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVGVLVPTTLLAQQHYN 666

Query: 668  NFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKWKDLGLLI 727
            +FRDRFA+WPVR+E++SRF+S KE    + + +EGKIDILIGTHKLLQ DVK+ +LGL+I
Sbjct: 667  SFRDRFADWPVRVEVMSRFKSAKEVQNAIAELAEGKIDILIGTHKLLQDDVKFSNLGLVI 726

Query: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787
            +DEEHRFGVR KE++KA+R++VDILTLTATPIPRTLNM+++GMRDLSIIATPPARRL+V+
Sbjct: 727  IDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIATPPARRLSVR 786

Query: 788  TFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAIGHGQMRE 847
            TFV E  N V++EA+LRE+LRGGQVYYL+NDV+ I+K A  L  LVPEAR+AIGHGQMRE
Sbjct: 787  TFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQALVPEARVAIGHGQMRE 846

Query: 848  RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907
            R+LE+VM+DF+H+RFNVLV +TIIETGID+P+ANTIIIERAD FGLAQLHQLRGRVGRSH
Sbjct: 847  RDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSH 906

Query: 908  HQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSGSM 967
            HQAYA+LLTP  KAMT DAQKRLEAIA+ +DLGAGF LATHDLEIRGAGELLGE QSG +
Sbjct: 907  HQAYAYLLTPTRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGELLGEGQSGQI 966

Query: 968  ETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFY 1027
            + +GF+LYME+LE AV A++ G +P+LE       E+ LR+P+L+P+D++PDV+ RL  Y
Sbjct: 967  QAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARLILY 1026

Query: 1028 KRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGGVI 1087
            KRIA+A  E+ L+E++VE+IDRFGLLP+P +NL+ +  L+ QA+KLGI K++   +GG I
Sbjct: 1027 KRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGITKIDAGPQGGRI 1086

Query: 1088 EFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFMRQLEEN 1145
            EF+    V+PM LI L+Q QP+ ++ +G T  KF   +   + R + +   + +L  N
Sbjct: 1087 EFSADTSVDPMVLIKLIQSQPKRYKFEGATLFKFQVPMERPEERFNTLEALLERLAPN 1144