Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

 Score = 1463 bits (3788), Expect = 0.0
 Identities = 724/1139 (63%), Positives = 902/1139 (79%), Gaps = 5/1139 (0%)

Query: 13   AGDQRQLGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIRQFTDSLVFSLAD 72
            AGD++ +G L GA+ A  +AE+A  H    +L  PD Q AL+L  E+ QF+ S V    D
Sbjct: 15   AGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVALFPD 74

Query: 73   WETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSYLHGHALVMKK 132
            WETLPYD+FSPHQ+IIS R+S LYQLP++ RG+ IVPV+TL+QR  P  +L  H L++K+
Sbjct: 75   WETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKR 134

Query: 133  GQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPYRLDFFDDEIDSL 192
            G   S D LR QL+ + YRHVDQV   GEYA+RG++LDL+PMGS  P+R+DFFDDEID++
Sbjct: 135  GDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTI 194

Query: 193  RVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRDAEHIYQQVSKGT 252
            R FD D QR++ E++ I LLPAHEFPT   AIE FR++WR +FE +R+ E +Y QVSKGT
Sbjct: 195  RTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGT 254

Query: 253  LPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETRARFENRGVDPMR 312
             PAGIEYWQPLFF E    LF Y PAN+ ++  G+++ +  +F ++   R++ R +DP+R
Sbjct: 255  WPAGIEYWQPLFF-EHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNIDPLR 313

Query: 313  PLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPDLAVQAQQKSPLD 372
            PLLPP  LWLR DEL A  K  P++QL +  +  +A   N   + LP LAV+ Q K PL 
Sbjct: 314  PLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLA 373

Query: 373  NLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSEATGNGRY--LMIGAA 430
             LR+F E FTG ++FSVESEGRREAL ELL RIK+ P+     S A        L++G+A
Sbjct: 374  ALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVLGSA 433

Query: 431  EHGFIDTLNNLALICESDLLGERVA--RRRQDSRRTINPDTLIRNLAELHPGQPIVHLEH 488
            E GFI   N +ALICESDLLG+RV   RR++D +   N D +IRNLAEL PGQP+VH++H
Sbjct: 434  ERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDH 493

Query: 489  GVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGD 548
            G+GRY G+ TLEAGG+  EY+ML Y N+AKLYVPVSSL+LISRY+GGAEE A LHKLGG+
Sbjct: 494  GIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGE 553

Query: 549  AWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFETTPDQAQA 608
            AW +AR+KAAEKVRDVAAELLD+YA+R  K GF F  D+EQY  F  +FPFE T DQA A
Sbjct: 554  AWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMA 613

Query: 609  INAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTLLAQQHFDN 668
            INAVLSDMCQ  AMDRLVCGDVGFGKTEVAMRAAF+A +N KQVAVLVPTTLLAQQHF+N
Sbjct: 614  INAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFEN 673

Query: 669  FRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKWKDLGLLIV 728
            FRDRFAN P+R+E+LSRF+S KEQ QIL+  ++GK+DIL+GTHKLL S++++ DLGLLIV
Sbjct: 674  FRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIV 733

Query: 729  DEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 788
            DEEHRFGVR KE++KAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA+KT
Sbjct: 734  DEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKT 793

Query: 789  FVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAIGHGQMRER 848
            FVR+ ++ V+REA+LRE++RGGQVY+L+N VE I K A  L +LVPEARI + HGQMRER
Sbjct: 794  FVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRER 853

Query: 849  ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 908
            ELE+VMNDF+HQRFN+LVCTTIIETGID+PTANTII++RAD  GLAQLHQLRGRVGRSHH
Sbjct: 854  ELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHH 913

Query: 909  QAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSGSME 968
            QAYA+LLTP PKA+T DA KRLEAIASLEDLGAGF LATHDLEIRGAGELLGE+QSG ++
Sbjct: 914  QAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQ 973

Query: 969  TIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYK 1028
            ++GF+LYME+LE AV+ALK+G+EP+L+DL  +QTEVE+R+P+LLP+++IPD+NTRLS YK
Sbjct: 974  SVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYK 1033

Query: 1029 RIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGGVIE 1088
            +IAS   ++EL E+KVELIDRFG LPD A NLL IA L+  A +L +RK+E +E+GG +E
Sbjct: 1034 QIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVE 1093

Query: 1089 FAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFMRQLEENAI 1147
            F     +NP++L+ LLQ QP+   +DGPT+LKFT  L ER  R+ +V + ++  ++N +
Sbjct: 1094 FYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLKNFQQNVL 1152