Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1199 a.a., transcription-repair coupling factor from Synechocystis sp000284455 PCC 6803

 Score =  577 bits (1487), Expect = e-168
 Identities = 303/687 (44%), Positives = 441/687 (64%), Gaps = 15/687 (2%)

Query: 428  GAAE-HGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPGQPIVHL 486
            G AE  GFI     L L+ + +L G+      +  R+     +   ++ +L PG  +VH 
Sbjct: 477  GLAELEGFILPTFRLVLVTDRELFGQHALATPEYVRKRRRATSKQVDINKLSPGDYVVHK 536

Query: 487  EHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLG 546
             HG+G++  +  L       EYLM+ YA D  L VP  SL  +SR+         LHK+G
Sbjct: 537  SHGIGKFLKLDALA----NREYLMIQYA-DGILRVPADSLDSLSRFRHTGTRPPELHKMG 591

Query: 547  GDAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFETTPDQA 606
            G  W   + K  + V+ +A +LL++YA+RA + G+A+  D    Q   DSFP++ TPDQ 
Sbjct: 592  GKVWEATKNKVRKAVKKLAVDLLNLYAKRAKQVGYAYPPDSPWQQELEDSFPYQPTPDQL 651

Query: 607  QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-NKQVAVLVPTTLLAQQH 665
            +A+  V  D+     MDRLVCGDVGFGKTEVA+RA F AV + NKQVA+L PTT+L QQH
Sbjct: 652  KAVQDVKRDLEGDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGNKQVALLAPTTVLTQQH 711

Query: 666  FDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKWKDLGL 725
            +   ++RFA +P+ I +L+RFR+  E+ +IL +   G++DI++GT ++L + VK+KDLGL
Sbjct: 712  YHTLKERFAPYPITIGLLNRFRTASEKKEILAKLKSGELDIVVGTQQVLGTSVKFKDLGL 771

Query: 726  LIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 785
            L++DEE RFGV  KE+IK ++ +VD+LTLTATPIPRTL M++SG+R++S+I TPP  R  
Sbjct: 772  LVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIPRTLYMSLSGIREMSLITTPPPSRRP 831

Query: 786  VKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAIGHGQM 845
            +KT +  Y+  V+R AI  E+ RGGQV+Y+   +E I++   +L ++VP ARIAIGHGQM
Sbjct: 832  IKTHLSPYNPEVIRTAIRNELDRGGQVFYVVPRIEGIEELGGQLRQMVPSARIAIGHGQM 891

Query: 846  RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 905
             E ELE  M  F+    ++LVCTTIIE G+DIP  NTII+E A  FGLAQL+QLRGRVGR
Sbjct: 892  EESELESTMLAFNDGEADILVCTTIIEAGLDIPRVNTIIVEDAQKFGLAQLYQLRGRVGR 951

Query: 906  SHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965
            S  QA+AWLL P+ K +T  A+ RL A+     LG+G+ LAT D+EIRG G LLG +QSG
Sbjct: 952  SGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSG 1011

Query: 966  SMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLS 1025
             ME IG+  YME+L++A+  ++    P +ED     T+++L + + +P D+IPD+  +++
Sbjct: 1012 QMEAIGYEFYMEMLQDAIKEIQGQEIPKVED-----TQIDLPLTAFIPSDYIPDLEEKMA 1066

Query: 1026 FYKRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGG 1085
             Y+RI S +  +EL +I ++  DR+G+LP P   L  + +L+  A+ LG  +++   K  
Sbjct: 1067 AYRRITSIESTDELPKIALDWGDRYGMLPSPVEELFKVVKLKHLAKSLGFSRIKVEGKQN 1126

Query: 1086 VIEFAEKNHVNPMWLIGLLQKQPQHFR 1112
            ++   E     P W + L +  P H +
Sbjct: 1127 LV--LETPMEEPAWKL-LAENLPNHLQ 1150



 Score = 79.7 bits (195), Expect = 1e-18
 Identities = 66/274 (24%), Positives = 124/274 (45%), Gaps = 22/274 (8%)

Query: 18  QLGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIRQFTDSLVFSLADWETLP 77
           QL  L       +V+ +A+     ++++   ++ A R   ++       V      E  P
Sbjct: 67  QLSGLPRLPKGLIVSSLAQSLEKNLLVITATLEEAGRWTAQLELMGWQTVNFYPTSEASP 126

Query: 78  YDSFSPHQEIISSRLSTLYQLPT--MQRGVLIVPVNTLMQ-RVCPHSYLHGHALVMKKGQ 134
           YD      E++  ++  L +L      +G  IV     +Q  + P + L  + L +++GQ
Sbjct: 127 YDPGRLESEMVWGQMQVLAELIQGHQVKGKAIVATEKALQPHLPPVATLREYCLALRRGQ 186

Query: 135 RLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPYRLDFFDDEIDSLRV 194
            +   +L   L   GY     V   G+++ RG ++D++P+ ++ P RL++F DE++ +R 
Sbjct: 187 EMDSKSLELTLARLGYERGSTVETEGQWSRRGDIVDIFPVSAELPVRLEWFGDELEKIRE 246

Query: 195 FDADTQRTLEEVESINLLPAH-----EFPTDKTAIELFRSQWRDKFEVKRDAEHIYQQVS 249
           FD  +QR+L+++  + L P       E   +  AI+L  S W +  E     E ++ +  
Sbjct: 247 FDPASQRSLDDLTGLVLTPTSFDQVIEPALNAQAIDL--SAWGEDAE----TEQLFGK-- 298

Query: 250 KGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIV 283
                 G++ +  L F EP   L  Y P  T+ V
Sbjct: 299 -----EGLQRFLGLAFTEP-ACLLDYLPTETVCV 326