Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

 Score =  753 bits (1944), Expect = 0.0
 Identities = 452/1160 (38%), Positives = 665/1160 (57%), Gaps = 55/1160 (4%)

Query: 28   ATLVAEIAERHPGPVIL-VAPDMQNALRLHDEIRQFTDSL-VFSLADWETLPYDSFSPHQ 85
            A ++ E+A R   P +L VA D     RL + I  F  ++ +     W+ +PYD  SP+ 
Sbjct: 25   ALVLGELAARPGVPAVLHVARDDVRLARLAETIAFFHPAVEILEFPAWDCVPYDRVSPNV 84

Query: 86   EIISSRLSTLYQL---PTMQRG--VLIVPVNTLMQRVCPHSYLHGHALVMKKGQRLSRDA 140
            EI++ RL TL +L   PT Q G  +++   + ++QRV P   L       + G RL    
Sbjct: 85   EIVARRLETLSRLSEEPTRQPGGRLVLTTASAILQRVPPRQILERGVFSARVGGRLDLGK 144

Query: 141  LRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPYRLDFFDDEIDSLRVFDADTQ 200
            L   L   GY   +QVME GEYA RG ++D++P G+ +P RLD F DE+DSLR FD  +Q
Sbjct: 145  LLDHLARHGYGRSEQVMEPGEYAVRGGIVDIFPPGAPEPLRLDLFGDELDSLRSFDPVSQ 204

Query: 201  RTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRDAEHIYQQVSKGTLPAGIEYW 260
            RT  + +++ L P  E   DK +I  FRS +R+ F     A+ +Y+ +S G    G+E+W
Sbjct: 205  RTTGQRDALILRPMSEVVLDKESISRFRSGYRELFGTPSAADALYEAISAGLPFMGMEHW 264

Query: 261  QPLFFNEPLPALFSYFPANTLIVNTGDIDASASR----FESETRARF-----------EN 305
             PLF +E +  LF+Y P   + ++ G   A  SR    FE     R            E 
Sbjct: 265  LPLF-HEGMDTLFAYVPDGPVTLDPGLDGALRSRQDQIFEYFEARRLMESVGDGAKASEK 323

Query: 306  RGVDPMRPLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTL------- 358
             G   +   LPP  ++L  DE        P       +  D A    +    L       
Sbjct: 324  PGGGMIYHALPPPRMFLEEDEFLRHCAGRPGAAFSAYAAPDVATEKGVVGDFLGRPGHEF 383

Query: 359  PDLAVQAQQKSPLDNLRKFLESFTGP---VVFSVESEGRREALGELLGRIKVAP------ 409
             D+  +A   +  D LR   ++       VV +  + G RE +  +L    ++P      
Sbjct: 384  ADIRARAGG-NVFDALRDHAQALRAAGKRVVLTAATMGARERMTGVLREHGLSPIVTAET 442

Query: 410  --KRILRLSEATGNGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINP 467
              + + R  +AT     ++    + GF     +LA+I E+D+LG+R++R     R+    
Sbjct: 443  WAEALERAKKAT----VVLTLILDRGF--ETPDLAVISEADVLGDRLSR---PVRKKKLG 493

Query: 468  DTLIRNLAELHPGQPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLH 527
            D  I +++ L  G  +VH++HG+G+Y+G+ TL AGG   + L + YA++ +LYVPV ++ 
Sbjct: 494  DKFIPDISALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCLRVVYADNNRLYVPVENIE 553

Query: 528  LISRYAGGAEENAPLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDK 587
            ++SRY G  +    L KLGG AW   + K  +++RD+A +L+ + A R  K G      +
Sbjct: 554  VLSRY-GSEQAGVQLDKLGGVAWQARKAKLKQRIRDMAEQLIGVAAARQLKVGEVISPPE 612

Query: 588  EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE 647
              Y  F   FP+  T DQ +AI   L D+     MDRL+CGDVGFGKTEVA+RAAF    
Sbjct: 613  GLYDEFAARFPYAETDDQLRAIADTLDDLAAGRPMDRLICGDVGFGKTEVALRAAFATAM 672

Query: 648  NNKQVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDIL 707
            + +QVAV+VPTTLLA+QH   F++RFA  PVRI  LSR  + ++   + E+ + G +DI+
Sbjct: 673  SGRQVAVVVPTTLLARQHHLTFKERFAGLPVRIGQLSRLVTARDTKAVKEEMAAGTLDIV 732

Query: 708  IGTHKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAM 767
            +GTH LL   V+++DLGLLIVDEE  FGV HKER+K MRADV +LTLTATPIPRTL +A+
Sbjct: 733  VGTHALLAKTVRFRDLGLLIVDEEQHFGVAHKERLKQMRADVHVLTLTATPIPRTLQLAL 792

Query: 768  SGMRDLSIIATPPARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAAD 827
            +G+R++SIIATPP  RLAV+TFV  +D +VVREAILRE  RGGQ +Y+   + +I K  +
Sbjct: 793  TGVREMSIIATPPVDRLAVRTFVLPFDPVVVREAILRERFRGGQCFYVCPRLTDIDKVME 852

Query: 828  RLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887
            RL  LVP+ R  + HGQM    LE VM  F   +++VLV T I+E+G+DIP ANTIII R
Sbjct: 853  RLTTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNIVESGLDIPRANTIIIHR 912

Query: 888  ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947
            AD FGLAQL+QLRGRVGR+  + YA+L  P  + ++  A KRL+ + +L+ LGAGF LA+
Sbjct: 913  ADMFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKTAAKRLDVMQTLDTLGAGFTLAS 972

Query: 948  HDLEIRGAGELLGEDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLT-SQQTEVEL 1006
            HDL+IRGAG LLG++QSG ++ +G  LY +LLE AV A + G  P +E+ + +   +++L
Sbjct: 973  HDLDIRGAGNLLGDEQSGHIKEVGIELYQQLLEEAVAAAREG--PGVEEASGAWSPQIQL 1030

Query: 1007 RMPSLLPDDFIPDVNTRLSFYKRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARL 1066
              P L+PD ++ D+  RL  Y+RIA    E E++E+  E++DRFG LPD   NLL +  +
Sbjct: 1031 GTPILIPDSYVKDLGLRLGLYRRIAGVTDEAEIDEMAAEMVDRFGPLPDEVENLLKVVTI 1090

Query: 1067 RQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELT 1126
            +   ++    K++   KG V+ F +    NP  L+  + +     +L    +L + ++  
Sbjct: 1091 KVLCRRANAEKVDAGPKGAVLSFRDNLFPNPGGLVRFIGQNVATVKLRPDHKLVYRRDWE 1150

Query: 1127 ERKTRMDWVRNFMRQLEENA 1146
              + R+  +   MR L + A
Sbjct: 1151 VARERIQGLGKLMRTLADIA 1170