Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1152 a.a., transcription-repair coupling factor from Rhodanobacter denitrificans MT42

 Score = 1173 bits (3035), Expect = 0.0
 Identities = 607/1131 (53%), Positives = 808/1131 (71%), Gaps = 11/1131 (0%)

Query: 9    LPVKAGDQRQLGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIRQFTDSL-V 67
            LP     +R      G+A A L+AE A  H G +++VA D Q A  L  E++ F   L V
Sbjct: 10   LPTSPKQRRYWTPPHGSARALLLAEAARAHGGLLVVVARDTQRAQALEAELKIFAGGLPV 69

Query: 68   FSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSYLHGHA 127
                DWETLPYD FSPH EI+S R++TLY+LP ++RGVL+VPV TLMQR+ PHS++ G  
Sbjct: 70   LHFPDWETLPYDVFSPHPEIVSQRVATLYRLPGVKRGVLVVPVATLMQRIAPHSHITGSG 129

Query: 128  LVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPYRLDFFDD 187
            LV+ KGQ+L     + +L+ +GYRHV QV E G++A RGALLD++PMG+ +PYR++ FDD
Sbjct: 130  LVLAKGQKLDLAGEQRRLEASGYRHVPQVAEPGDFAVRGALLDIFPMGTAEPYRIELFDD 189

Query: 188  EIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRDAEHIYQQ 247
            E++S+R FD +TQR+ + V+ + LLPA EFP  + A + FR   R++F +      +YQ 
Sbjct: 190  EVESIRSFDPETQRSQQPVDRVELLPAREFPLTEEAAKEFRGNLRERFPIDVRRCPLYQD 249

Query: 248  VSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETRARFENRG 307
            + +G  P GIEY+ PLFF +    LF Y   + L V       +A +F ++T  R++ R 
Sbjct: 250  MKEGVTPGGIEYYLPLFFAQTA-TLFDYLADDALFVLGEGAGEAADQFWAQTAERYDQRA 308

Query: 308  VDPMRPLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPDLAVQAQQ 367
             D  RP+LPP  L+L  ++L   L +  R+++  +   + A +T    +  P+L +  + 
Sbjct: 309  HDIERPVLPPAELYLPPEQLRERLNKRLRVEV-VEPGHEHAVDTGT--QPAPELPLNRKG 365

Query: 368  KSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSE--ATGNGRY- 424
            + P  +LR FL S+ G V+ + +S GRREAL E L    + P  +   +   A    R+ 
Sbjct: 366  EEPGTSLRHFLASYPGRVLIAADSAGRREALVETLAGAGMKPDNVDGWTSFLAEDAQRFA 425

Query: 425  LMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRR---TINPDTLIRNLAELHPGQ 481
            + I + E GF  T   + ++ E +L GERV   R+  RR     +P+ +IR+L EL PG 
Sbjct: 426  ITIASLEQGFALTKPAITVLTERELYGERVRSERERKRRRGTARDPEAIIRDLTELTPGA 485

Query: 482  PIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP 541
            PIVH++HGVGRYQG+ +++ GG+ GE+L + YA   KLYVPV+ L L+SRY+G A E AP
Sbjct: 486  PIVHVDHGVGRYQGLVSMDVGGMDGEFLTIEYARGDKLYVPVAQLGLVSRYSGTAPELAP 545

Query: 542  LHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFET 601
            LH LGGDAW RAR+KAAEKVRDVAAELL IYAQR A+ G +   D++  + F  SFPFE 
Sbjct: 546  LHSLGGDAWERARRKAAEKVRDVAAELLAIYAQRQARGGESLPIDRQLVEEFGSSFPFEE 605

Query: 602  TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTLL 661
            TPDQ  AI AVL D+  P AMDR++CGDVGFGKTEVA+RAAF      +QVAVLVPTTLL
Sbjct: 606  TPDQESAIEAVLDDLAAPRAMDRVICGDVGFGKTEVALRAAFATATAGRQVAVLVPTTLL 665

Query: 662  AQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKWK 721
            AQQH+ NF DRFA+WPVR+++LSRF+S KE  + L++ ++G+ID+++GTHKLLQ DVK+K
Sbjct: 666  AQQHYRNFADRFADWPVRVDVLSRFKSAKEVNEALKRLADGQIDVIVGTHKLLQPDVKFK 725

Query: 722  DLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 781
            +LGL+IVDEE RFGVR KE++K +RA+VD+LT+TATPIPRTLNMAM+G+RDLS+IATPPA
Sbjct: 726  NLGLVIVDEEQRFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMAGLRDLSLIATPPA 785

Query: 782  RRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAIG 841
             R AV+TF+  +D   +REA+ RE+ RGGQVY+L+N+V++I++    L ELVP+ARI I 
Sbjct: 786  HRTAVRTFISAWDPATIREALQRELSRGGQVYFLHNEVQSIERTVRELEELVPDARIRIA 845

Query: 842  HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901
            HGQM ERELE VM DFH QRFNVLVCTTIIETGIDIPTANTIII+RAD FGLAQLHQLRG
Sbjct: 846  HGQMPERELEGVMADFHRQRFNVLVCTTIIETGIDIPTANTIIIDRADRFGLAQLHQLRG 905

Query: 902  RVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 961
            RVGRSHH+AYA+L+ P  +++T DAQKRLEA+ASLE+LGAGF LATHDLEIRGAGELLG+
Sbjct: 906  RVGRSHHRAYAYLVVPDRRSITADAQKRLEALASLEELGAGFTLATHDLEIRGAGELLGD 965

Query: 962  DQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVN 1021
            +QSG ++ IGF LY ELL+ AV ALK+G+ P  +  +  +TEVEL +P+L+PDD++PDV+
Sbjct: 966  EQSGQIQEIGFGLYTELLDRAVRALKSGKVPDFDLSSEHETEVELHLPALIPDDYLPDVH 1025

Query: 1022 TRLSFYKRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGN 1081
             RL+ YKRIASA+ E+EL +++VE+IDRFGLLP+P R L  +A L+  A  LGIRKL+  
Sbjct: 1026 HRLTLYKRIASARSEDELRDLQVEMIDRFGLLPEPTRQLFAVASLKLMATPLGIRKLDFG 1085

Query: 1082 EKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRM 1132
              GG I F EK  VNPM +I L+Q+QP+ ++LDG  +LK   EL     R+
Sbjct: 1086 ANGGRIVFREKPEVNPMTIIQLIQRQPRVYKLDGQDKLKVILELPGASERI 1136