Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Shewanella loihica PV-4

 Score = 1256 bits (3250), Expect = 0.0
 Identities = 636/1139 (55%), Positives = 854/1139 (74%), Gaps = 14/1139 (1%)

Query: 19   LGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIRQFTDSL---VFSLADWET 75
            L +LTGAA A  +A++ E++    ++V PD  +ALRL  E+          V    D ET
Sbjct: 21   LSQLTGAARAISLAKLCEQYSSMTLVVTPDTPSALRLEAELGYLLAPKSIPVMLFPDRET 80

Query: 76   LPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSYLHGHALVMKKGQR 135
            LPYDSFSPHQ+++S RL TL ++P+    ++IVP++TLM ++ P S+L G+ L++ KG  
Sbjct: 81   LPYDSFSPHQDLVSQRLETLSRIPSAGHSLVIVPMSTLMVKLPPQSFLTGNVLLLSKGDN 140

Query: 136  LSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPYRLDFFDDEIDSLRVF 195
               +A+R+QL   GY HV+QV EHGE+A RG+++DL+PMG+  PYR++ FDDE++S+R F
Sbjct: 141  YPLEAVRSQLVNTGYHHVEQVYEHGEFAVRGSIIDLFPMGAQSPYRIELFDDEVESIREF 200

Query: 196  DADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVK-RDAEHIYQQVSKGTLP 254
            D +TQR+  E+ESI LLPA EFPT+  AIE FR ++R +FEV  ++ E IYQ VS+  +P
Sbjct: 201  DPETQRSSGEIESIRLLPAKEFPTNDAAIEGFRQRYRRQFEVVVKEPESIYQMVSRKVMP 260

Query: 255  AGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETRARFENRGVDPMRPL 314
            AGIE + PLFF+E   +LF Y P    +V  GD++ +A     E   R+ENR VDP+RPL
Sbjct: 261  AGIESYLPLFFDETA-SLFDYLPGECQLVQVGDLENAAKHHLQEINQRYENRRVDPLRPL 319

Query: 315  LPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPDLAVQAQQKSPLDNL 374
            LPP+ L+L T+++    K+ PR  +K +          L    LP++A   + K PL +L
Sbjct: 320  LPPKDLYLLTEQVFEAFKQLPRFLIKGNEATGTCVEAQL--EALPNIAANHKLKQPLISL 377

Query: 375  RKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSEATGNGRY--LMIGAAEH 432
            ++F    T P++F VESEGRREAL ELL +I++ P  +  L   +   +   L++     
Sbjct: 378  KEFANGGT-PILFCVESEGRREALLELLAKIEIKPALLDHLDSFSHKPQPFGLIVAPLSQ 436

Query: 433  GFIDTLN---NLALICESDLLGERVAR-RRQDSRRTINPDTLIRNLAELHPGQPIVHLEH 488
            G I       + AL+CE++L G+R+A+ RR+D +R ++ D LI++LAEL  GQPIVHL+H
Sbjct: 437  GAIYHPKKGPSWALVCETELFGQRIAQQRRRDKQRQVSQDALIKDLAELKVGQPIVHLDH 496

Query: 489  GVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGD 548
            GV  YQG+ TL+ GG+  EYL L YA   KLYVPV+SL+LIS+Y+ GA++   L+KLG +
Sbjct: 497  GVALYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVASLNLISQYSVGADDAPQLNKLGNE 556

Query: 549  AWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFETTPDQAQA 608
            +W +A++KA EK+RDVAAELLD+YA+R A+ G A + D+E+Y  F  SFPFE T DQ  A
Sbjct: 557  SWTKAKRKAIEKIRDVAAELLDVYARRQARPGEACRLDREEYAQFAGSFPFEETVDQETA 616

Query: 609  INAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTLLAQQHFDN 668
            I+AVL+DMC P++MDRLVCGDVGFGKTEVAMRAAF+AV + KQVA+LVPTTLLAQQH++N
Sbjct: 617  IDAVLTDMCSPISMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPTTLLAQQHYEN 676

Query: 669  FRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKWKDLGLLIV 728
            F+DRFA+WP++IE++SRF++ KEQ  +L+Q   G++DI+IGTHKLLQS+ K+++LGLLI+
Sbjct: 677  FKDRFADWPIKIEVMSRFKTAKEQQAVLKQLELGQVDIVIGTHKLLQSEAKFENLGLLII 736

Query: 729  DEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 788
            DEEHRFGVR KE+IKA+RA++DILTLTATPIPRTLNMAMSGMRDLSIIATPPA+RLAVKT
Sbjct: 737  DEEHRFGVRQKEKIKALRANIDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKT 796

Query: 789  FVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAIGHGQMRER 848
            FVREYD+  VREA+LRE+LRGGQVY+L+N VE I+K A  +  L+PEAR+   HGQMRER
Sbjct: 797  FVREYDDATVREALLREILRGGQVYFLHNSVETIEKRAREIEALLPEARVVTAHGQMRER 856

Query: 849  ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 908
            +LE+VM+DF+HQ++NVLVCTTIIETGID+P+ANTIIIERAD+FGLAQLHQLRGRVGRSHH
Sbjct: 857  DLEKVMSDFYHQKYNVLVCTTIIETGIDVPSANTIIIERADNFGLAQLHQLRGRVGRSHH 916

Query: 909  QAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSGSME 968
            QAYA+L+ PHPK MT DA KRLEAI +LEDLGAGF LAT DLEIRGAGELLG++QSG + 
Sbjct: 917  QAYAYLMMPHPKRMTKDAIKRLEAIGALEDLGAGFMLATQDLEIRGAGELLGDEQSGHIS 976

Query: 969  TIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYK 1028
             IGF+LYME+LE+AV +LK G+EPSL+ +   Q E++LR+P+LLP+D++ DVN RLS YK
Sbjct: 977  KIGFTLYMEMLEDAVKSLKEGKEPSLDQMLRGQCEIDLRIPALLPEDYVGDVNIRLSLYK 1036

Query: 1029 RIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGGVIE 1088
            RIA+      L+E+KVELIDRFGLLP   +NL++++  + QA  LGI K+E + KGG +E
Sbjct: 1037 RIANCATAQALDELKVELIDRFGLLPQATKNLMEVSLFKHQATALGIAKIEMHAKGGSLE 1096

Query: 1089 FAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFMRQLEENAI 1147
            F   + V+P ++IGLLQ QPQ++R+DGP++LKF       K R+  +   + QL ++ +
Sbjct: 1097 FNNDHCVDPGFIIGLLQSQPQNYRMDGPSKLKFLMPTETDKDRLALLSLIISQLMQHRL 1155