Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1234 a.a., Probable transcription-repair coupling factor Mfd (TRCF) from Mycobacterium tuberculosis H37Rv

 Score =  633 bits (1633), Expect = 0.0
 Identities = 406/1106 (36%), Positives = 595/1106 (53%), Gaps = 50/1106 (4%)

Query: 12   KAGDQRQLGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIRQFTDSLVFSLA 71
            +AG +     L   A A L+   A    GP+++V    + A  L  E+R      V  L 
Sbjct: 32   RAGGRPDELTLIAPASARLLVASALARQGPLLVVTATGREADDLAAELRGVFGDAVALLP 91

Query: 72   DWETLPYDSFSPHQEIISSRLSTLYQLPTMQR-------GVLIVPVNTLMQRVCPHSYLH 124
             WETLP++  SP  + + +RL  L +L            GV++  V +L+Q + P   + 
Sbjct: 92   SWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQLGPPLGVVVTSVRSLLQPMTPQLGMM 151

Query: 125  GHALVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPYRLDF 184
               L +  G     D + A+L    Y  VD V   GE+A RG +LD++   ++ P R++F
Sbjct: 152  -EPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIFAPTAEHPVRVEF 210

Query: 185  FDDEIDSLRVFDADTQRTLEEVESINLLP--AHEFPTDKT----AIELFRSQWRDKFEVK 238
            + DEI  +R+F    QR++ E++   L+     E    +     A +L       +  V 
Sbjct: 211  WGDEITEMRMFSVADQRSIPEIDIHTLVAFACRELLLSEDVRARAAQLAARHPAAESTVT 270

Query: 239  RDAEHIYQQVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANT--LIVNTGDIDASASRFE 296
              A  +  ++++G    G+E   P+ +++    L    P  T  L+ +   +   A+   
Sbjct: 271  GSASDMLAKLAEGIAVDGMEAVLPVLWSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLI 330

Query: 297  SETRARFENR------GVDPMRPLLPPEAL----WLRTDELNAELKRWPRMQLKTDSLAD 346
               R   E        G    +  +  E L    ++  D++ A   R          L+D
Sbjct: 331  RTGREFLEASWSVAALGTAENQAPVDVEQLGGSGFVELDQVRAAAARTGHPWWTLSQLSD 390

Query: 347  KAANTNLAFRTLPDLAVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIK 406
            ++A   L  R  P      +    +  + +   +  G         G    + E L    
Sbjct: 391  ESA-IELDVRAAPSARGHQRDIDEIFAMLRAHIATGGYAALVAPGTGTAHRVVERLSESD 449

Query: 407  VAPKRILRLSEATGNGRY-LMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTI 465
              P  +L   +A   G   ++ G    G I    NL +I E+DL G RV+   +  R   
Sbjct: 450  T-PAGMLDPGQAPKPGVVGVLQGPLRDGVIIPGANLVVITETDLTGSRVSAA-EGKRLAA 507

Query: 466  NPDTLIRNLAELHPGQPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYA---------ND 516
                ++  LA L  G  +VH +HG+GR+  M     GG + EYL+L YA         N 
Sbjct: 508  KRRNIVDPLA-LTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNT 566

Query: 517  AKLYVPVSSLHLISRYAGGAEENAP-LHKLGGDAWARARQKAAEKVRDVAAELLDIYAQR 575
             KLYVP+ SL  +SRY GG    AP L +LGG  WA  + KA   VR++A EL+ +YA+R
Sbjct: 567  DKLYVPMDSLDQLSRYVGG---QAPALSRLGGSDWANTKTKARRAVREIAGELVSLYAKR 623

Query: 576  AAKQGFAFKHDKEQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT 635
             A  G AF  D        D+F F  T DQ  AI  V +DM +P+ MDR++CGDVG+GKT
Sbjct: 624  QASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKT 683

Query: 636  EVAMRAAFLAVENNKQVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQI 695
            E+A+RAAF AV++ KQVAVLVPTTLLA QH   F +R + +PV I+ LSRF    E   +
Sbjct: 684  EIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAV 743

Query: 696  LEQASEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLT 755
            ++  ++G +DI+IGTH+LLQ+ V+WKDLGL++VDEE RFGV HKE IK++R  VD+LT++
Sbjct: 744  IDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMS 803

Query: 756  ATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDNLVVREAILREVLRGGQVYYL 815
            ATPIPRTL M+++G+R++S I TPP  R  V T+V  +D+  +  A+ RE+LR GQ +Y+
Sbjct: 804  ATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYV 863

Query: 816  YNDVENIQKAADRLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 875
            +N V +I  AA R+ ELVPEAR+ + HGQM E  LE  +  F ++  ++LVCTTI+ETG+
Sbjct: 864  HNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGL 923

Query: 876  DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935
            DI  ANT+I+ERAD FGL+QLHQLRGRVGRS  + YA+ L P    +T  A  RL  IA 
Sbjct: 924  DISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQ 983

Query: 936  LEDLGAGFALATHDLEIRGAGELLGEDQSGSMETIGFSLYMELLENAVDALKAGREPSLE 995
              +LGAG A+A  DLEIRGAG +LG +QSG +  +GF LY+ L+  A++  +     + +
Sbjct: 984  NNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAAD 1043

Query: 996  DLTSQQTE------VELRMPSLLPDDFIPDVNTRLSFYKRIASAKKENELEEIKVELIDR 1049
              T +  E      ++L + + LP D+I     RL  Y+R+A+A  + E+  +  EL DR
Sbjct: 1044 GQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVVDELTDR 1103

Query: 1050 FGLLPDPARNLLDIARLRQQAQKLGI 1075
            +G LP+PAR L  +ARLR   +  GI
Sbjct: 1104 YGALPEPARRLAAVARLRLLCRGSGI 1129