Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1197 a.a., transcription-repair coupling factor (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  628 bits (1620), Expect = 0.0
 Identities = 386/1057 (36%), Positives = 597/1057 (56%), Gaps = 41/1057 (3%)

Query: 89   SSRLSTLYQLPTMQ--RGVLIVPVNTLMQRVCPHSYLHGHALVMKKGQRLSRDALRAQLD 146
            ++R+++LY L   +  RG+ I+ V+ L+ ++ P      H L + +G+ +S + +  Q  
Sbjct: 123  AARMASLYALSRREHPRGI-IISVDNLLPKLPPVDIFEHHELRLARGEDMSPELVLDQAI 181

Query: 147  GAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPYRLDFFDDEIDSLRVFDADTQRTLEEV 206
              G+     V   GE A RG +LD++P G ++P RL+FF D ++ +R+FDA +QR+L  +
Sbjct: 182  DWGFERAQMVSRPGEAARRGDILDIFPPGYEKPLRLEFFGDTLEDIRLFDATSQRSLASL 241

Query: 207  ESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRDAEHIYQQVSK----------GTLPAG 256
            E   LLP       +   E    +W+   ++++D     +Q +           G LP G
Sbjct: 242  EEFRLLPVAPVVGCREYREAAARRWK---QLRKDGVIDGEQAAALARMAEGEVTGLLP-G 297

Query: 257  IEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETRARFENRGVDPMRPLLP 316
              Y    +  + LP    +   +   ++T  ++A+ + +E+    +++   +   RPL+ 
Sbjct: 298  AWYENATWMEDWLPRDAVWLLPDRADLSTA-LEAARTNWEALLDRQYDEHRLRQPRPLVL 356

Query: 317  PEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNL-AFRTL--PDLAVQAQQKSPLDN 373
             +A   +       +  + R+ +  +          L AFR L     +V   +  P   
Sbjct: 357  RDADEAQAAWRGRSVAHFERLVMGVERTGVDLPERRLHAFRDLFAATPSVPVDEDRPWQR 416

Query: 374  LRKFLESFTGP---VVFSVESEGRREALGELLGRIKVAPKRILRLSEATGNGRYLMIGAA 430
            L   L  +T     VV S  S+  R    +L  +  V P   LR S A   G Y ++   
Sbjct: 417  LVTALRQWTSERRQVVLSFASDRSRRKFLKLAEQDGVRPN--LRYSPAD-RGLYALVAPF 473

Query: 431  EHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIR--NLAELHPGQPIVHLEH 488
              G     +N+ +I      GE V + + D +  +     +      +L PG  +VH ++
Sbjct: 474  RAGIDLAWDNVLVI------GEDVLQPKADRQPRVPTGAFLGLDKYDDLSPGDLLVHRDY 527

Query: 489  GVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGD 548
            GVGR+ G+  ++ GG+  ++L+L YA + +LY+PV  L LI R+ GG +    L KLGG 
Sbjct: 528  GVGRFGGLHRMDLGGVANDFLLLEYAGEDRLYLPVDRLSLIQRFKGGDDSVPSLDKLGGS 587

Query: 549  AWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFETTPDQAQA 608
             W   + KA + +  +AA+L+ +YA R   +G+ +    E Y+ F  SF FE TPDQA+A
Sbjct: 588  GWRACKDKARKAIEKIAADLVQMYAYRKVAKGYRYGPLGELYREFEASFGFEETPDQARA 647

Query: 609  INAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTLLAQQHFDN 668
            I  VL DM +P  MDRLVCGDVGFGKTEVA+RAAF A    +QVA+L PTT+LA+QH+  
Sbjct: 648  IQDVLDDMEKPEPMDRLVCGDVGFGKTEVALRAAFRAAAEGRQVALLCPTTVLAEQHYQT 707

Query: 669  FRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKWKDLGLLIV 728
            FR R A +PV + MLSRF S ++Q ++L+ A+ G+IDILIGTH+LL  DV+  +LGLL++
Sbjct: 708  FRSRLAGFPVNVGMLSRFVSRQKQKEVLQAAARGQIDILIGTHRLLSDDVQLPNLGLLVL 767

Query: 729  DEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 788
            DEE RFGVRHKE++K  R +VD LTLTATPIPRTL ++MSG+R+LS+I T P  R  V T
Sbjct: 768  DEEQRFGVRHKEKLKKFRKNVDALTLTATPIPRTLQLSMSGIRELSVIETAPPERKPVAT 827

Query: 789  FVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAIGHGQMRER 848
             + E D   +R+ + RE+ R GQV++++N V+ +++ A+ +  LVP AR+ + HGQM ER
Sbjct: 828  ALIERDQNALRQILEREIAREGQVFWVHNRVQGLERVAEFVRGLVPTARVGMAHGQMGER 887

Query: 849  ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 908
            ELE  M+ F H   +VLVCT I+E+G+D P ANT+I+++A  FGL QL+QLRGRVGRS  
Sbjct: 888  ELEDTMHKFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLGQLYQLRGRVGRSDR 947

Query: 909  QAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSGSME 968
            QAYA  +    + +   A++R+  I  L+ LGAGF +A  DL +RGAG +LGE QSG M 
Sbjct: 948  QAYAVFVVSDAERLPEQARQRMRIILELDYLGAGFQVAMEDLRLRGAGNILGEVQSGHMT 1007

Query: 969  TIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYK 1028
             +G  LY+E+LE  V  LK G  P      S + E+ + + + +P+ +I D   RL FYK
Sbjct: 1008 RLGLDLYLEMLEEEVARLK-GAPPR----ESVEPELNIGLAAHIPETYIGDARERLKFYK 1062

Query: 1029 RIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGN-EKGGVI 1087
             ++SA     L+++++EL DRFG  P   RN L +  L++    L + + + + E+  ++
Sbjct: 1063 ALSSAPDAATLQDVEMELRDRFGPCPPELRNFLAVLVLKRFLATLQVVRADIHPERLRLV 1122

Query: 1088 EFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQE 1124
                +  + P  L+  +  +    RL  P+ L+   E
Sbjct: 1123 WDERQTVIAPERLVAWVAARQGKARLVPPSTLEVRME 1159