Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1177 a.a., transcription-repair-coupling factor from Marinobacter adhaerens HP15

 Score = 1211 bits (3132), Expect = 0.0
 Identities = 617/1151 (53%), Positives = 819/1151 (71%), Gaps = 19/1151 (1%)

Query: 10   PVKAGDQRQLGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIRQFT------ 63
            P +  D R  G+L G++ A  + E A  H G  +++     +A+RL   +R F       
Sbjct: 20   PSRPADHRTWGQLHGSSEALAICESARAHKGLTLVITRSTADAIRLEQAMRFFLGLPPEE 79

Query: 64   -------DSL-VFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 115
                   D L + SL DWETLPYD FSPHQ+IIS R+ TL++LP    GVL+VP  TLM 
Sbjct: 80   DGPAVSDDGLELLSLPDWETLPYDLFSPHQDIISRRIRTLHRLPATSHGVLVVPARTLMH 139

Query: 116  RVCPHSYLHGHALVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMG 175
            R+ P +YL G+ L+++ GQ L  ++ R QL+ AGYRH + V EHGEYA RGA+LD++PMG
Sbjct: 140  RLPPVNYLQGNTLLLEVGQSLDIESWRMQLEAAGYRHAENVYEHGEYAVRGAILDIFPMG 199

Query: 176  SDQPYRLDFFDDEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKF 235
            + QP+R+D FDDEI++LR FD +TQR+++ +E I LLPA EFP  K A   FRS+W ++F
Sbjct: 200  ASQPFRIDLFDDEIETLRTFDPETQRSIDRIERIELLPAFEFPWHKEARSGFRSRWFEQF 259

Query: 236  EVKRDAEHIYQQVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRF 295
                    IYQ V+ G  P GIEY+ PLFF+E    LF Y P  T +     ++ + S F
Sbjct: 260  PDADKDTPIYQDVTHGITPPGIEYYLPLFFDETA-TLFDYLPGATHVFTADGLNDAVSHF 318

Query: 296  ESETRARFENRGVDPMRPLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAF 355
            +SETR R+E+R  D +RP+LPP+ L+L+ +EL  +LK +PR+ +  ++  D A + N   
Sbjct: 319  DSETRNRYEDRRHDRLRPILPPKRLFLQQEELFGQLKAFPRVTVSAET-KDAAGSVNCPT 377

Query: 356  RTLPDLAVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRIL-- 413
             TLPD+A+  +   P   L++FL  F G V+   ES GRREAL E LG   V  K +   
Sbjct: 378  TTLPDIAMDGRAADPAGRLKRFLGEFDGHVLICAESSGRREALMENLGEQGVELKTLSGW 437

Query: 414  -RLSEATGNGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIR 472
                +   +   + I   E G +   +++ALI E+ L GERV +RR+  + T   D   R
Sbjct: 438  QAFLDDKESSVAITIAPMEQGLVLPEHSVALITETALFGERVLQRRRREKPTETDDAGFR 497

Query: 473  NLAELHPGQPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRY 532
            +L+EL  G P+VH++HGVGRY G+ T+   G   E+LML YA  +KLYVPVSSLHLISRY
Sbjct: 498  DLSELRIGAPVVHIDHGVGRYLGLETITVEGEASEFLMLGYAGGSKLYVPVSSLHLISRY 557

Query: 533  AGGAEENAPLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQL 592
            AG   E+APLHKLG D W+ A+QKA EK+RD AAELLD+YA+R A++GF+F+  KE Y+ 
Sbjct: 558  AGNDTEHAPLHKLGTDRWSTAKQKALEKIRDTAAELLDVYARREARKGFSFEDPKEAYRA 617

Query: 593  FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQV 652
            F   FPFE TPDQ  AI +V  DM     MDRLVCGDVGFGKTEVAMRAAFLA  + KQV
Sbjct: 618  FAAGFPFEETPDQQVAIQSVFEDMTSEQPMDRLVCGDVGFGKTEVAMRAAFLATWSGKQV 677

Query: 653  AVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHK 712
            AVLVPTTLLAQQH+++FRDRF++ PV++E+LSRFR+  + ++ LE    G+ DI+IGTHK
Sbjct: 678  AVLVPTTLLAQQHYESFRDRFSDTPVQVELLSRFRTAGQTSKALEAVENGRADIVIGTHK 737

Query: 713  LLQSDVKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRD 772
            LLQ D+K+K+LGL+I+DEEHRFGV+ KER+KA+RA+VD+L LTATPIPRTLNMAM  +RD
Sbjct: 738  LLQGDIKFKNLGLVIIDEEHRFGVQQKERLKALRAEVDMLNLTATPIPRTLNMAMGHLRD 797

Query: 773  LSIIATPPARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAEL 832
            LSIIATPPARRL+VKTFVR+ DN +V+EAILRE+LRGGQVY+L+NDV  I+K A+ L  L
Sbjct: 798  LSIIATPPARRLSVKTFVRQKDNAMVKEAILREILRGGQVYFLHNDVATIEKTAEDLRSL 857

Query: 833  VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFG 892
            +PEAR+ + HGQMRER+LE++M+DF+H+RFNVLVCTTIIETGID+P+ANTIIIERAD FG
Sbjct: 858  IPEARVGVAHGQMRERDLEKIMSDFYHKRFNVLVCTTIIETGIDVPSANTIIIERADKFG 917

Query: 893  LAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952
            LAQLHQLRGRVGRSHHQAYA+LLTP PK++T DA+KRL+AI+  +DLGAGF LATHDLEI
Sbjct: 918  LAQLHQLRGRVGRSHHQAYAYLLTPPPKSITADAKKRLDAISEAQDLGAGFMLATHDLEI 977

Query: 953  RGAGELLGEDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLL 1012
            RGAGELLGE+QSG +E+IGF+LYM+LL+ AV A++ GR P+ +   S  TE+ LR+P+L+
Sbjct: 978  RGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIREGRTPNADLPLSHGTEMNLRIPALI 1037

Query: 1013 PDDFIPDVNTRLSFYKRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQK 1072
            P+D++PDV+ RL  YKRIAS      L+E++VE+IDRFGLLPDPA+NL+    LR +A+ 
Sbjct: 1038 PEDYLPDVHNRLMLYKRIASVDSPEALKELQVEMIDRFGLLPDPAKNLIRQTELRLRAEA 1097

Query: 1073 LGIRKLEGNEKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRM 1132
            LGI K++  ++   +EF     V+P+ L+  +Q  P  +RL+G    +F  +      ++
Sbjct: 1098 LGIVKVDAGKEWARLEFGSSTPVDPLVLVKKVQSAPDQYRLEGANSFRFRLKDATTGGKL 1157

Query: 1133 DWVRNFMRQLE 1143
            D +   + +LE
Sbjct: 1158 DGISRMLGELE 1168