Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1147 a.a., transcription-repair coupling factor from Pantoea sp. MT58

 Score = 1887 bits (4889), Expect = 0.0
 Identities = 929/1145 (81%), Positives = 1037/1145 (90%)

Query: 1    MPEHYRYSLPVKAGDQRQLGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIR 60
            MPE  RY+LPVK+GD RQLG++ GAA A   A I E H GPV+++ PD Q ALRL DEIR
Sbjct: 1    MPEQTRYTLPVKSGDHRQLGQIIGAAHAVECASITEHHAGPVLMITPDTQTALRLLDEIR 60

Query: 61   QFTDSLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120
            QFTD  V  LADWETLPYDSFSPHQ+IIS+RLSTLYQLP MQRG+LI+PVNTLMQRVCPH
Sbjct: 61   QFTDLPVTHLADWETLPYDSFSPHQDIISARLSTLYQLPVMQRGMLIMPVNTLMQRVCPH 120

Query: 121  SYLHGHALVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPY 180
            S+LHGHALVMK+GQ+LSRD LR QL+ AGYRHVDQVMEHGEYATRGALLDL+PMGSDQPY
Sbjct: 121  SFLHGHALVMKQGQKLSRDRLRDQLEQAGYRHVDQVMEHGEYATRGALLDLFPMGSDQPY 180

Query: 181  RLDFFDDEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRD 240
            R+DFFDDEIDSLR+FD D+QRTLE V  INLLPAHEFP+DK AIELFRS+WR+ F+V+R+
Sbjct: 181  RIDFFDDEIDSLRLFDVDSQRTLEAVTEINLLPAHEFPSDKAAIELFRSRWREIFDVRRE 240

Query: 241  AEHIYQQVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETR 300
            +EH+YQQVSKGTLPAGIEYWQPLFF +PLP+LFSY P NTLIVN GD++ SA RF  +  
Sbjct: 241  SEHVYQQVSKGTLPAGIEYWQPLFFEQPLPSLFSYLPDNTLIVNCGDLEGSARRFWQDAE 300

Query: 301  ARFENRGVDPMRPLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPD 360
            AR+ENR VDPMRPLL P  LWLR D L  ELK WPR+Q+  + L DKAANTNL +  LPD
Sbjct: 301  ARYENRRVDPMRPLLEPVTLWLRPDALMGELKAWPRIQMTNEVLPDKAANTNLGYTPLPD 360

Query: 361  LAVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSEATG 420
            LAVQAQ K+PLD+LR+F+E+F+G VVFSVESEGRRE L ELL RIK+ P+ + R  E   
Sbjct: 361  LAVQAQAKAPLDHLRQFIETFSGAVVFSVESEGRRETLQELLARIKLRPQPVHRFDETVD 420

Query: 421  NGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG 480
            +   LMIGA+E GFIDT  N ALICESDLLGERV+RRRQD+RRTINPD LIRNLAEL PG
Sbjct: 421  DRFSLMIGASERGFIDTQGNRALICESDLLGERVSRRRQDTRRTINPDILIRNLAELSPG 480

Query: 481  QPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540
            QP+VHLEHGVGRY G+TTLEAGGI+ EYLML+YANDAKLYVPVSSLHLISRYAGGA++NA
Sbjct: 481  QPVVHLEHGVGRYIGLTTLEAGGIQAEYLMLSYANDAKLYVPVSSLHLISRYAGGADDNA 540

Query: 541  PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFE 600
            PLHKLG DAW+RARQKAAEKVRDVAAELLDIYAQRAAK GFAFKH++EQYQLFC+SFPFE
Sbjct: 541  PLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAKSGFAFKHNREQYQLFCESFPFE 600

Query: 601  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL 660
            TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA+EN+KQVAVLVPTTL
Sbjct: 601  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAIENHKQVAVLVPTTL 660

Query: 661  LAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKW 720
            LAQQH+DNFRDRFANWPVRIEMLSRFR+ KEQ Q+LEQAS+GKIDILIGTHKLL SD+KW
Sbjct: 661  LAQQHYDNFRDRFANWPVRIEMLSRFRTAKEQAQVLEQASDGKIDILIGTHKLLMSDLKW 720

Query: 721  KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780
             DLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
Sbjct: 721  HDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780

Query: 781  ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI 840
            ARRLAVKTFVRE+D+LV+REAILREVLRGGQVYYLYNDVENI+KAA RL+ELVPEAR+AI
Sbjct: 781  ARRLAVKTFVREFDDLVIREAILREVLRGGQVYYLYNDVENIEKAAQRLSELVPEARVAI 840

Query: 841  GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900
            GHGQMRER+LERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
Sbjct: 841  GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900

Query: 901  GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960
            GRVGRSHHQAYAWLLTPHPK+MT DA KRLEAIASLEDLGAGFALATHDLEIRGAGELLG
Sbjct: 901  GRVGRSHHQAYAWLLTPHPKSMTADAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960

Query: 961  EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020
            ++QSG MET+GF+LYMELLENAVDALKAGREPSLEDLTS QTEVELRMP+LLP+ FIPDV
Sbjct: 961  DEQSGQMETLGFTLYMELLENAVDALKAGREPSLEDLTSNQTEVELRMPALLPETFIPDV 1020

Query: 1021 NTRLSFYKRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEG 1080
            +TRLS YKRIASA+ E EL+E+KVE+IDRFGLLPDPARNLLD+A +R +A+ +G+RK+E 
Sbjct: 1021 STRLSLYKRIASAEVEEELQELKVEMIDRFGLLPDPARNLLDVAIIRLKARAVGLRKIEA 1080

Query: 1081 NEKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFMR 1140
            ++KGG  +FA KN+V+P WLIGLLQK+PQ ++LDGPTRL+FT+EL+ERK RM+WV+ F+ 
Sbjct: 1081 SDKGGYFDFAPKNNVDPAWLIGLLQKEPQQWKLDGPTRLRFTRELSERKIRMEWVQGFVS 1140

Query: 1141 QLEEN 1145
            QL E+
Sbjct: 1141 QLAEH 1145