Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1156 a.a., transcription-repair coupling factor from Lysobacter sp. OAE881

 Score = 1146 bits (2964), Expect = 0.0
 Identities = 590/1145 (51%), Positives = 806/1145 (70%), Gaps = 11/1145 (0%)

Query: 12   KAGDQRQL--GELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIR-----QFTD 64
            K G QR       + +A A  VA  A  H  P+++VA D Q A +L  ++      Q T+
Sbjct: 13   KTGQQRAWWRAPASPSALAFHVAAAASAHSAPLLVVARDNQGAHQLESDLHTLLGAQQTE 72

Query: 65   SLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSYLH 124
              V    DWETLPYD FSPH +I+S RL+ L++LPT++RG++IVPV TL+QR+ P  ++ 
Sbjct: 73   LPVIGFPDWETLPYDVFSPHPDIVSQRLAALHRLPTLKRGIVIVPVQTLLQRLAPLKHVV 132

Query: 125  GHALVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPYRLDF 184
            G +  ++ GQRL  DA + +L+ AGYRHV QV++ G++A RG LLD+YPMG+DQP+R++ 
Sbjct: 133  GGSFDVRTGQRLDLDAEKRRLESAGYRHVPQVLDPGDFAVRGGLLDVYPMGADQPFRVEL 192

Query: 185  FDDEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRDAEHI 244
             DDEI+++R FD ++QR+LE++++++LLP  E P    A++      RD+F++      +
Sbjct: 193  LDDEIETIRAFDPESQRSLEKIDAVHLLPGREVPLSDAALKRALDALRDRFDLDTRRSAL 252

Query: 245  YQQVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETRARFE 304
            YQ +  G  P GIEY+ PLFF +    LF Y  A TL V       +A +F + T  R+E
Sbjct: 253  YQDLKAGLAPPGIEYYLPLFF-DTTSTLFDYLDAETLPVIADGAMEAADQFWTHTGERYE 311

Query: 305  NRGVDPMRPLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPDLAVQ 364
             R  D  RPLLPP+AL+L  D L   L    R+++  +  A +   + L  +  P L V 
Sbjct: 312  QRRHDLERPLLPPDALYLPPDALRERLNAGARVEVCGEGHAQRERASALGDQPAPSLPVA 371

Query: 365  AQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSEATGN--G 422
            A+  +P D L  FL S+ G V+ + +S GRREAL E+L    + P+ +        N   
Sbjct: 372  ARDHAPADALTSFLSSYPGRVLVAADSPGRREALLEILQAGALKPEVVADFPAFLANDAS 431

Query: 423  RY-LMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPGQ 481
            R+ + +   + GF  T     ++ E  L  ER ++ R+  R    P+ +I++L EL  G 
Sbjct: 432  RFSIAVAPLDDGFAITEPAFVVLTERQLFPERASQPRRRRRVGREPEAIIKDLGELTEGA 491

Query: 482  PIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP 541
            PIVH +HGVGRY+G+ TLEAGG+  EYL + YA   +LYVPV+ LHLI+RY+G +EE AP
Sbjct: 492  PIVHEDHGVGRYRGLVTLEAGGMPAEYLEIEYAKGDRLYVPVAQLHLINRYSGASEETAP 551

Query: 542  LHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFET 601
            LH LGG+ W +A++KAAEKVRDVAAELL+I A+R A+ G A   D+  Y+ F  +FPFE 
Sbjct: 552  LHSLGGEQWTKAKRKAAEKVRDVAAELLEIQAKRQARAGLAIDVDRAVYEPFAAAFPFEE 611

Query: 602  TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTLL 661
            TPDQ  AI AV+ D+     MDR+VCGDVGFGKTEVA+RAAF      KQVAVLVPTTLL
Sbjct: 612  TPDQHAAIEAVIRDLASSQPMDRVVCGDVGFGKTEVAVRAAFTTAMGGKQVAVLVPTTLL 671

Query: 662  AQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKWK 721
            A+QH+ NFRDRFA+WP+R+E+LSRF++ KE    L + ++G ID+++GTH+LLQ DV++K
Sbjct: 672  AEQHYRNFRDRFADWPIRVEVLSRFKTKKEIEAELAKVADGTIDVIVGTHRLLQKDVRFK 731

Query: 722  DLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 781
            DLG +IVDEE RFGVR KE +KA+RA+V +LTLTATPIPRTLNMAM+G+RDLSIIATPPA
Sbjct: 732  DLGAVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPA 791

Query: 782  RRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAIG 841
             RLAV+TFV  +D++ +REA  RE+ RGGQVY+L+NDVE+I +    L ELVPEARI + 
Sbjct: 792  HRLAVQTFVVPWDDMQLREAFQRELSRGGQVYFLHNDVESIGRMQRELQELVPEARIGVA 851

Query: 842  HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901
            HGQM ERELERVM DFH QR+NVL+ TTIIE+GIDIP ANTIII RAD FGLAQLHQLRG
Sbjct: 852  HGQMPERELERVMLDFHKQRYNVLLSTTIIESGIDIPNANTIIINRADRFGLAQLHQLRG 911

Query: 902  RVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 961
            RVGRSHH+AYA+L+ P  KA+T DA+KRL+AIA++++LGAGF LATHDLEIRGAGELLGE
Sbjct: 912  RVGRSHHRAYAYLVVPDRKAITEDARKRLDAIAAMDELGAGFTLATHDLEIRGAGELLGE 971

Query: 962  DQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVN 1021
            +QSG M  +GFSLY ELLE AV +++ G+ P ++ + ++  EVELR+P+L+PDD++PDV+
Sbjct: 972  EQSGQMAEVGFSLYTELLERAVRSIRQGKLPDVDMVEARGAEVELRIPALIPDDYLPDVH 1031

Query: 1022 TRLSFYKRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGN 1081
            TRL+ YKRI+ A+  +EL E++VE+IDRFGLLPDPA+ +  +A L+ +A +LGIRKL+  
Sbjct: 1032 TRLTLYKRISGARDTDELRELQVEMIDRFGLLPDPAKYMFAVAELKLRATELGIRKLDLG 1091

Query: 1082 EKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFMRQ 1141
            E GG + F EK +V+PM +I L+Q QP+ ++++GP +L+ T +L +  +R+   +  +  
Sbjct: 1092 ETGGRVHFVEKPNVDPMAIIRLIQGQPKLYKMEGPDKLRMTLDLPDASSRVLAAKGILTA 1151

Query: 1142 LEENA 1146
            L+  A
Sbjct: 1152 LQPAA 1156