Pairwise Alignments

Query, 350 a.a., electron transport complex, RnfABCDGE type, D subunit from Enterobacter asburiae PDN3

Subject, 415 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit B from Vibrio cholerae E7946 ATCC 55056

 Score =  115 bits (287), Expect = 3e-30
 Identities = 84/293 (28%), Positives = 131/293 (44%), Gaps = 48/293 (16%)

Query: 58  EALVLKLRKMAVSRILADNSALLTGLLLAISIPPFAPWWMVVLGTVFAVIIAKQLYGGLG 117
           E L   +RK  V+         +T +L A+ +PP  P W   LG  F V++AK+++GG G
Sbjct: 144 EVLFCMVRKHEVNE-----GFFVTSILFALIVPPTLPLWQAALGITFGVVVAKEVFGGTG 198

Query: 118 HNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAATVPGFMDALHVIFTGHTALGADMNALR 177
            N  NPA+ G   L  ++P Q++  L                  ++T             
Sbjct: 199 RNFLNPALAGRAFLFFAYPAQISGDL------------------VWTA------------ 228

Query: 178 MGVDGISQATPLDTFKTSLHAGHSVEQIMKSAI-----YSGMLAGAGWQWVNLAYLLGGL 232
              DG S AT L  +     AG  +       I     + G + G+  +   LA ++G  
Sbjct: 229 --ADGYSGATALSQWAQG-GAGALINNATGQTITWMDAFIGNIPGSIGEVSTLALMIGAA 285

Query: 233 FLLQQKAIRWHIPVSFLVTLTVCATLGWVFSPESLASPQM----HLLSGATMLGAFFILT 288
           F++      W I    ++ + + +TL  V   ++ A   M    HL+ G    G FF+ T
Sbjct: 286 FIVYMGIASWRIIGGVMIGMILLSTLFNVIGSDTNAMFNMPWHWHLVLGGFAFGMFFMAT 345

Query: 289 DPVTASTTNRGRLIFGALAGLLVWLIRSFG-GYPDGVAFAVLLANITVPLIDY 340
           DPV+AS TN G+  +G L G++  LIR     YP+G+  A+L AN+  PL D+
Sbjct: 346 DPVSASFTNSGKWAYGILIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDH 398



 Score = 25.0 bits (53), Expect = 0.004
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 1/124 (0%)

Query: 209 AIYSGMLAGAGWQWVNLAYLLGGLFLLQQKAIRWHIPVSFLVTLTVCATLGWVFSPESLA 268
           A++ GM    G     L +L  G  L    A  WH  ++ ++  T+ +  GW       A
Sbjct: 67  AMFWGMYNAGGQAIAALNHLYSGDQLAAIVAGNWHYWLTEMLGGTMSSDAGWGSKMLLGA 126

Query: 269 SPQMHLLSGATMLGAFF-ILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGYPDGVAFA 327
           +  + + +   ++G F+ +L   V     N G  +   L  L+V           G+ F 
Sbjct: 127 TYFLPIYATVFIVGGFWEVLFCMVRKHEVNEGFFVTSILFALIVPPTLPLWQAALGITFG 186

Query: 328 VLLA 331
           V++A
Sbjct: 187 VVVA 190