Pairwise Alignments

Query, 509 a.a., Uncharacterized protein related to deoxyribodipyrimidine photolyase from Enterobacter asburiae PDN3

Subject, 569 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  446 bits (1146), Expect = e-129
 Identities = 243/556 (43%), Positives = 323/556 (58%), Gaps = 56/556 (10%)

Query: 4   LRLILGDQLNPHHSWFDACNPNVIYVMLELRAETAYVLHHAQKVIAIFAAMRAFASALKE 63
           LRL+LGDQL  +HSWF   +  V+Y++ EL+ E+ YV HH QKV A FAAM  FA +L  
Sbjct: 20  LRLLLGDQLGSNHSWFSQHDDGVLYLIAELKQESRYVTHHVQKVCAFFAAMADFAKSLTA 79

Query: 64  KGHRVRYVRLSDGSNRGALEDNLNALVAHY----GADRVIWQEPDEWRLDTQLQAWANAA 119
            GHRV ++ L D +       NL AL+ H     GA R  +Q PDE+RL  QL  +A   
Sbjct: 80  SGHRVLHLTLDDTAEFA----NLPALLCHVLQITGARRFEYQRPDEYRLLLQLGTFA-VP 134

Query: 120 SVETACVSSEHFFTTREQVSAFFATRKSWRMEYFYREMRRQHGILLTSEGEPEGGKWNFD 179
            V+   V SEHF    +++S  F   K   ME FYR MR++  IL+     P GG+WNFD
Sbjct: 135 GVQVEMVDSEHFLLPFDEISMLFPKGKHILMESFYRRMRKRFDILMDG-ARPMGGQWNFD 193

Query: 180 AENRKRWSGEP--PAPEDSRPLHDYSALWAEIQRCGVNTFG--EPQA------------- 222
             NR +         PE     +D S +   +QR G+ T G  EPQA             
Sbjct: 194 GSNRNKLKAADIKNLPEPLLFANDISEIVLRLQRHGIVTIGNLEPQATQAITKGCKASYV 253

Query: 223 -------------------GKFRWPLNRSEAKARLDEFITHVLPHFGAWQDAM---HAEE 260
                                  WP+NR ++ A L  F  H LP FG +QDAM   HA  
Sbjct: 254 SGDLFDAMPDLEHVSKTPMNNLLWPINREQSLALLAHFCRHCLPLFGRFQDAMTANHASA 313

Query: 261 PFLFHSLISFALNTKMLNPREVVAAAQQVWRS-------GHAPLPAVEGFIRQILGWREY 313
             L+HS +SF++N+K+L+P EV+ AA   + +       G   +  VEGF+RQILGWREY
Sbjct: 314 WSLYHSRLSFSINSKLLHPGEVIKAAISAYEASCIDGANGDVDMAQVEGFVRQILGWREY 373

Query: 314 VRGIYWSQMPGYRELNALDQHAPLPDWFWTGRTQMRCLAHAVGQSLTEAYAHHIQRLMVI 373
           VRG+YW+ MP Y  LNAL     LP +FW+G T+M C+ HA+GQSL  AYAHHIQRLM+ 
Sbjct: 374 VRGVYWANMPDYGMLNALGAENRLPHYFWSGDTRMNCMRHAIGQSLDYAYAHHIQRLMIT 433

Query: 374 GNFSLLSGLSPQAVHEWYLGVYIDAFEWVELPNTLGMSQFGDGGLLASKPYVSSASYIHK 433
           GNF LL+ + P+ V +WYLG+Y+DA EWVE+PNT GM+ F DGG++ +KPY +S +YI+K
Sbjct: 434 GNFCLLTDIDPKQVDDWYLGIYVDAIEWVEMPNTRGMALFADGGIVGTKPYAASGAYINK 493

Query: 434 MSNYCQGCRYQHSQRTGELACPFNALYWDFFARNQARLGNNPRLGIVFKQLADMKEEERQ 493
           MS+YC+GC Y    ++G L+CPFN+LYW F  ++  RLG N RLG++F     M E +R 
Sbjct: 494 MSDYCEGCHYDIKAKSGALSCPFNSLYWRFINKHAERLGANHRLGMIFSSWYKMPESQRT 553

Query: 494 AIADRAGYVRLNLNEL 509
           AI   A    ++L  L
Sbjct: 554 AILATAEQYIVDLERL 569