Pairwise Alignments

Query, 400 a.a., RND family efflux transporter, MFP subunit from Enterobacter asburiae PDN3

Subject, 394 a.a., RND efflux system, membrane fusion protein CmeA from Pseudomonas fluorescens FW300-N2E2

 Score =  154 bits (390), Expect = 3e-42
 Identities = 110/346 (31%), Positives = 175/346 (50%), Gaps = 27/346 (7%)

Query: 58  ALAP-VQAATAVNKAVPRYLTGLGTITAANTVTVRSRVDGQLMAIHFQEGQQVKAGDLLA 116
           A AP V   T   +AV  +    G  +A     VR +VDG ++   F+EG  +KAG  L 
Sbjct: 45  AQAPQVSVVTLKPQAVTLFNDLPGRTSAYRLAEVRPQVDGIVLKRLFKEGADIKAGQQLY 104

Query: 117 EIDPSQFKVALAQAQGQLAKDKATLANARRDLVRYQQLVKTNLVSRQELDTQQSLVSETQ 176
           +IDPS ++V LA AQ       A+L  +R    RY+QL+    VS+QE DT +S   +  
Sbjct: 105 QIDPSTYEVTLASAQ-------ASLEQSRSLTTRYRQLIDEQAVSKQEYDTARSQQMQA- 156

Query: 177 GTIKADEAAVASAQLQLDWSRITAPIDGRVGLKQVDIGNQISSGDTTGIVVITQTHPIDL 236
                 EA V  AQ+ L ++++ API GR+G   V  G  +S+G    + +I Q  PI +
Sbjct: 157 ------EAQVKGAQINLRYTKMFAPISGRIGRSAVTEGALVSNGQAAPLAIIQQLDPIYV 210

Query: 237 VFTLPESDIATVVQAQKAGKGLVVEAWDRSNKQKLS---------EGSLLSLDNQIDTTT 287
             T P  ++  + +A ++G+  + +  DR+ K  L+         +GSL   +  +D  T
Sbjct: 211 DVTQPYGEVLKLRRALESGQ--LQKTADRAAKVSLTLQDGSQYPLQGSLEFSEVSVDEAT 268

Query: 288 GTIKLKARFNNQDDALFPNQFVNARMLVATEENAVVIPTAALQMGNEGN-FVWVLNDDNK 346
           G++ L+A F N D  L P  FV+AR+     E A++ P   +    +G     V+  DNK
Sbjct: 269 GSVTLRAVFPNPDHLLLPGIFVHARLQEGVAEQAILAPQIGVTRDLKGTPTAMVVTADNK 328

Query: 347 VSKHLVKTGIQDSQTVVIAAGLSAGERVVTDGIDRLTEGAKVEVVE 392
           V +  +K G      V++ +GLSAG++++ +G+  +  G  V   E
Sbjct: 329 VEQRQLKVGRTVGANVLVESGLSAGDKIIVEGLQFIKPGITVVAQE 374