Pairwise Alignments

Query, 442 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

Subject, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

 Score =  273 bits (698), Expect = 8e-78
 Identities = 162/425 (38%), Positives = 235/425 (55%), Gaps = 10/425 (2%)

Query: 6   FSELELDESLLNALESKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPVLQH 65
           F+ L L   +L A+E KG+  P+ IQ  AIP  L G+DV+ +A TGTGKTA + LP+L+ 
Sbjct: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62

Query: 66  LLDFPRKKSGPPRILILTPTRELAMQVADHARELAANTHLDIATITGGVAYMNHAEVFSE 125
           L   P+ ++   R LILTPTRELA Q+ D+      +  L  A + GGV      +   +
Sbjct: 63  LAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122

Query: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRNQTM 185
             DI+VAT GRL+    +       +E L+LDEADRMLDMGF +DI  I      + Q +
Sbjct: 123 GADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNL 182

Query: 186 LFSATLEGEAIKDFAERLLEDPVEVSATPSTRERKKIHQWYYRADNLEHKVELLKHLLKQ 245
           LFSAT   E I++ A+ L+ +PVE+S +P+    + + Q  Y AD ++ K ++L  L+K+
Sbjct: 183 LFSATFSTE-IRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD-VKKKPDMLVKLVKE 240

Query: 246 EDALRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMAQIKRTEGIKRLTDGRVNVLVAT 305
            +  + +VF+R +   + LA  L   G+    + G  +Q  RT  +     G V +LVAT
Sbjct: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300

Query: 306 DVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGIAISLVEAHDYLLLQKIGR 365
           D+AARGIDIP +  V+NF++P+  + Y+HRIGRTGRAG  G AISLV A +   L  I R
Sbjct: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360

Query: 366 YVDEPLKARVIDELRPTTRAPSEKMTGKPSKKALAKRAERKEKEKE--------KPRVKQ 417
                L    +    PT + P  K+  +P K    K+ ++ E   E        KP+   
Sbjct: 361 LTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAENKPKAGH 420

Query: 418 RHRDT 422
           R + T
Sbjct: 421 RGQPT 425